Gene omics information

Query gene ID	1615922_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615922_at	CB918668	-	-	7e-27	At3g58450	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.91	98.8	1612110_at	CB918668	hypothetical protein LOC100254700	-	7e-27	At3g58450	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.19	20.9	1613454_at	CB347074	hypothetical protein LOC100264991	-	1e+0	At5g59860	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.14	14.4	1609261_s_at	CB982050	hypothetical protein LOC100264228	-	4e+0	At2g26020	PDF1.2b (plant defensin 1.2b)	S.X.	H.G.	Please select
0.13	13.3	1612866_at	CB349090	hypothetical protein LOC100247488	-	6e-19	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.11	11.3	1621346_at	CB978597	hypothetical protein LOC100263108	-	8e-2	At1g74440	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.5	100.0	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
20.0	99.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.3	99.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.0	99.9	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
14.2	99.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.8	99.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.5	99.7	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.3	99.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	2e-178	623	1612110_at	CB918668	hypothetical protein LOC100254700	-	7e-27	At3g58450	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	3e-8	57	1607182_s_at	CD800686	hypothetical protein LOC100265784	-	3e-15	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.06	4e-7	54	1622430_x_at	CF204495.1	-	-	5e-13	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.06	2e-6	52	1610505_at	CD801882	hypothetical protein LOC100260568	-	5e-16	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	4e-1	34	1621156_at	CD799492	-	-	4e-2	At5g14040	mitochondrial phosphate transporter	C.G.	S.X.	Please select
0.03	4e-1	34	1616517_at	CF201452.1	-	-	5e-9	At1g26470	-	C.G.	S.X.	Please select
0.02	4e-1	34	1610369_at	CB918396	-	-	1e-4	At5g05280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1608260_at	CA818640	hypothetical protein LOC100251558	-	3e-2	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please select
0.02	4e-1	34	1606575_at	CB918396	hypothetical protein LOC100248379	-	1e-4	At5g05280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	7e-27	121	Arabidopsis thaliana	At3g58450	825014	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-4	46	Glycine max	GmaAffx.92954.1.S1_at	CF808679	-	-	3e-7	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.06	1e-2	40	Hordeum vulgare	Contig2390_s_at	Contig2390	-	-	4e-1	At3g47850	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os10g0339600	NM_195850.1	-	Glycoside transferase, six-hairpin domaincontaining protein	1e-3	At4g34260	FUC95A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-5	50	Populus trichocarpa	Ptp.3898.1.S1_at	DN498740	hypothetical protein	-	3e-11	At3g11930	universal stress protein (USP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-3	42	Triticum aestivum	Ta.24665.2.S1_at	CD452527	-	-	1e-4	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	6e-4	44	Zea mays	Zm.13992.4.A1_at	CD439804	-	-	7e+0	At4g01026	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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