CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615898_at

Gene name hypothetical protein LOC100247526

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1615898_at CF404727 hypothetical protein LOC100247526 - 6e-2 At2g22100 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.80 93.6 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) S.X. H.G.
0.80 93.6 1617280_s_at CF373668 hypothetical protein LOC100258720 - 5e-3 At2g27385 unknown protein S.X. H.G.
0.80 93.6 1609418_s_at CF568955 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein S.X. H.G.
0.80 93.6 1607851_at CF415102 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein S.X. H.G.
0.80 93.6 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 97.3 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 38 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.04 2e-2 38 1618582_at CF415097 hypothetical protein LOC100254493 - 4e-3 At2g22100 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e-2 38 1609757_s_at CF517381 hypothetical protein LOC100244902 - 1e-8 At5g20700 senescence-associated protein-related C.G. S.X.
0.03 1e+0 32 1621891_at CF415470 hypothetical protein LOC100242841 - 8e-2 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.04 1e+0 32 1620192_at CA818412 - - 4e+0 At5g17120 - C.G. S.X.
0.01 1e+0 32 1619852_s_at CF207182 hypothetical protein LOC100265737 - 4e-12 At4g14040 SBP2 (SELENIUM-BINDING PROTEIN 2) C.G. S.X.
0.03 1e+0 32 1618317_at CB972677 hypothetical protein LOC100243000 - 3e-45 At2g05220 40S ribosomal protein S17 (RPS17B) C.G. S.X.
0.03 1e+0 32 1614254_at CD008037 - - 3e-1 At3g10980 unknown protein C.G. S.X.
0.03 1e+0 32 1610473_at CD008037 hypothetical protein LOC100259805 - 3e-1 At3g10980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 38 Arabidopsis thaliana At2g22100 816745 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA - - - C.G. S.X.
0.04 9e-2 38 Glycine max GmaAffx.65398.1.S1_at BU760893 - - 4e-3 At4g18760 AtRLP51 (Receptor Like Protein 51) C.G. S.X.
0.06 3e-2 38 Hordeum vulgare HW02P03u_x_at HW02P03u - - 5e-2 At3g12510 unknown protein C.G. S.X.
0.04 1e-1 38 Oryza sativa OsAffx.24683.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.35988.4.A1_a_at BU883315 - - 1e-7 At5g50400 PAP27 (PURPLE ACID PHOSPHATASE 27) C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.4189.1.S1_at CA637767 - - 8e-1 At5g06990 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.17910.1.S1_at CK787221 phloem-specific lectin - 2e+0 At4g40040 histone H3.2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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