CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615804_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1615804_at CF403733 - - 4e-2 At5g65910 BSD domain-containing protein S.X. H.G.
0.53 75.2 1611870_at CF414975 hypothetical protein LOC100247177 - 8e-152 At5g09740 HAM2 (histone acetyltransferase of the MYST family 2) S.X. H.G.
0.44 64.1 1618759_at CB348270 hypothetical protein LOC100256813 - 1e+0 At1g76010 nucleic acid binding S.X. H.G.
0.40 57.7 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.29 37.7 1608671_at CF511645 hypothetical protein LOC100243213 - 1e+0 At5g65609 unknown protein S.X. H.G.
0.24 28.7 1613582_at CF204478.1 hypothetical protein LOC100261825 - 6e-12 At5g14170 CHC1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.1 89.1 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 38 1615107_at CD721229 - - 1e-59 At4g03100 rac GTPase activating protein, putative C.G. S.X.
0.02 5e-2 38 1611337_at CD721229 hypothetical protein LOC100252743 - 1e-59 At4g03100 rac GTPase activating protein, putative C.G. S.X.
0.02 2e-1 36 1608464_at CF513767 hypothetical protein LOC100248373 /// hypothetical protein LOC100267697 - 2e-8 At1g61140 EDA16 (embryo sac development arrest 16) C.G. S.X.
0.02 7e-1 34 1621538_at CA809611 hypothetical protein LOC100261262 - 4e-1 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.02 7e-1 34 1614986_at CF372413 hypothetical protein LOC100261262 - 5e-15 At5g45410 unknown protein C.G. S.X.
0.02 7e-1 34 1611228_a_at CB922630 hypothetical protein LOC100257366 - 2e+0 At3g60260 phagocytosis and cell motility protein ELMO1-related C.G. S.X.
0.01 3e+0 32 1620766_at CF609305 hypothetical protein LOC100249220 - 9e-18 At1g23000 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e+0 32 1619049_at CF204385.1 - - 4e-1 At3g59620 - C.G. S.X.
0.02 3e+0 32 1618278_at CF210786 - - 4e+0 At5g53486 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 40 Arabidopsis thaliana At5g65910 836720 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB - - - C.G. S.X.
0.02 2e-1 38 Glycine max HgAffx.537.1.A1_at CK394501 - - 4e-2 At4g15140 unknown protein C.G. S.X.
0.04 1e-6 54 Hordeum vulgare Contig18046_at Contig18046 - - 4e-1 At2g11910 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa OsAffx.20947.1.S1_x_at - - - 0 C.G. S.X.
0.21 3e-47 190 Populus trichocarpa PtpAffx.214289.1.S1_at pmrna27792 hypothetical protein - 3e-14 At4g31570 unknown protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.5282.2.S1_at CA644092 - - 4e+0 At2g01300 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4604.1.A1_at CD959559 - - 5e+0 At5g37220 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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