CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615801_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1615801_at CK138174.1 - - 4e-1 At1g65060 4CL3 S.X. H.G.
0.83 94.6 1611724_at CB346313 hypothetical protein LOC100242039 - 1e+0 At1g48460 unknown protein S.X. H.G.
0.83 94.6 1618535_at CA818656 hypothetical protein LOC100252930 - 4e+0 At5g62623 - S.X. H.G.
0.83 94.6 1609267_at CK138210.1 hypothetical protein LOC100243236 - 4e-16 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) S.X. H.G.
0.83 94.6 1613802_at CB974339 hypothetical protein LOC100245819 - 4e+0 At4g01650 - S.X. H.G.
0.77 92.3 1615649_at BQ800288 hypothetical protein LOC100257872 - 4e+0 At3g22620 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.3 100.0 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
24.2 100.0 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
22.4 100.0 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
17.4 99.9 GSM436421 V. riparia (VR, PI588259) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
16.3 99.9 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
12.1 99.8 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
11.4 99.7 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
9.3 99.6 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.0 99.1 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.9 99.1 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 3e-51 200 1609307_at CD715818 hypothetical protein LOC100254698 - 3e-16 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) C.G. S.X.
0.03 4e-1 34 1622415_at CF519029 - - 4e+0 At4g04953 unknown protein C.G. S.X.
0.02 4e-1 34 1615527_at CF372317 hypothetical protein LOC100246222 - 7e+0 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
0.02 4e-1 34 1614959_at BQ799150 hypothetical protein LOC100257499 - 1e-10 At5g47060 senescence-associated protein-related C.G. S.X.
0.02 4e-1 34 1614504_s_at CF372317 hypothetical protein LOC100246222 - 7e+0 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
0.03 4e-1 34 1614450_at CF404206 hypothetical protein LOC100267971 - 1e-1 At4g36540 BEE2 (BR Enhanced Expression 2) C.G. S.X.
0.03 4e-1 34 1613232_at CF516759 hypothetical LOC100244581 - 1e+0 At1g15710 prephenate dehydrogenase family protein C.G. S.X.
0.03 4e-1 34 1607414_at CF511773 hypothetical protein LOC100255365 - 1e+0 At1g02330 - C.G. S.X.
0.02 2e+0 32 1622562_at CD006619 - - 7e-40 At1g79510 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 36 Arabidopsis thaliana At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. - - - C.G. S.X.
0.15 3e-8 59 Glycine max Gma.1190.1.S1_at AF279267.1 4-coumarate:coenzyme A ligase - 1e-3 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HU08H24u_s_at HU08H24u - - 3e+0 At4g17150 unknown protein C.G. S.X.
0.03 7e-4 46 Oryza sativa Os06g0656500 AK068985.1 - - 2e-2 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) C.G. S.X.
0.26 3e-30 133 Populus trichocarpa PtpAffx.87600.2.S1_at AF008183.1 4-Coumarate:CoA ligase - 3e-4 At1g65060 4CL3 C.G. S.X.
0.04 4e-4 46 Triticum aestivum TaAffx.8533.2.S1_at CA627108 - - 4e-3 At3g21230 4CL5 (4-coumarate:CoA ligase 5) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1025.1.A1_at AI770423 - - 8e-1 At2g25312 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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