Gene omics information

Query gene ID	1615798_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	S.X.	H.G.	Please select
0.91	98.8	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.91	98.8	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	S.X.	H.G.	Please select
0.91	98.8	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.83	94.6	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.3	100.0	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
19.1	99.9	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
18.6	99.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
17.7	99.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.9	99.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
15.0	99.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
13.3	99.8	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
12.8	99.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.4	99.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.4	99.7	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	3e-163	573	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	1622419_at	CB343655	GAGA-binding transcriptional activator BBR/BPC1-like	-	5e-20	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	C.G.	S.X.	Please select
0.02	7e-1	34	1614421_at	CB914634	hypothetical protein LOC100257774	-	3e-1	At4g22666	-	C.G.	S.X.	Please select
0.02	7e-1	34	1612953_at	CF606754	hypothetical LOC100254354	-	2e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	C.G.	S.X.	Please select
0.02	7e-1	34	1608767_at	CF202491.1	-	-	2e-2	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	C.G.	S.X.	Please select
0.02	7e-1	34	1607223_at	BQ796376	hypothetical protein LOC100251280	-	4e-14	At5g21105	L-ascorbate oxidase/ copper ion binding / oxidoreductase	C.G.	S.X.	Please select
0.02	7e-1	34	1606744_at	CF511662	-	-	2e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	C.G.	S.X.	Please select
0.01	3e+0	32	1620811_at	BQ792368	-	-	7e-11	At5g06043	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1618824_at	BQ799714	hypothetical protein LOC100268064	-	2e-4	At4g09890	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-5	52	Arabidopsis thaliana	At1g66370	842955	MYB113 (myb domain protein 113)	Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-2	42	Glycine max	Gma.162.1.A1_x_at	AB029270.1	GmMYB13 protein	-	2e-7	At4g34990	AtMYB32 (myb domain protein 32)	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HVSMEm0012I10r2_x_at	HVSMEm0012I10r2	-	-	3e+0	At3g03890	FMN binding	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	OsAffx.15476.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	9e-7	56	Populus trichocarpa	PtpAffx.224279.1.S1_x_at	pmrna42684	hypothetical protein	-	5e-2	At1g66380	MYB114 (myb domain protein 114)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	Ta.17328.1.S1_at	CA619663	-	-	2e+0	At4g35987	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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