Gene omics information

Query gene ID	1615789_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1615789_at	BQ795769	-	-	1e-3	At1g26250	proline-rich extensin, putative	S.X.	H.G.	Please select
0.83	94.6	1617430_s_at	Z54234.1	chitinase class I	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.80	93.6	1607833_at	CD713864	-	-	1e+0	At1g49800	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1620438_at	CD713864	hypothetical protein LOC100243043	-	1e+0	At1g49800	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1611361_at	CB008551	hypothetical protein LOC100241171	-	5e-1	At4g24540	AGL24 (AGAMOUS-LIKE 24)	S.X.	H.G.	Please select
0.50	72.7	1610538_at	BQ796215	hypothetical protein LOC100260291	-	3e-1	At1g60740	peroxiredoxin type 2, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.1	100.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
37.9	100.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
34.8	100.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
12.8	99.8	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	5e-25	113	1615469_at	CB974963	-	-	1e-3	At4g13390	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.03	1e-4	46	1620767_at	BQ800601	glutamine synthetase	-	9e-47	At1g66200	ATGSR2	C.G.	S.X.	Please select
0.02	1e-3	42	1616194_at	CD797238	hypothetical protein LOC100262251	-	6e-11	At1g78660	gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative	C.G.	S.X.	Please select
0.02	2e-2	38	1610238_s_at	CF404536	hypothetical protein LOC100250511	-	0	At1g06430	FTSH8	C.G.	S.X.	Please select
0.02	2e-2	38	1609540_at	CF404536	-	-	0	At1g06430	FTSH8	C.G.	S.X.	Please select
0.02	9e-2	36	1620331_at	CA808971	-	-	5e-1	At3g28600	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.03	9e-2	36	1616993_at	CB349511	-	-	7e-3	At1g23465	signal peptidase-related	C.G.	S.X.	Please select
0.03	9e-2	36	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	1609989_at	CF415187	-	-	2e+1	At4g08190	Ras-related GTP-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-3	44	Arabidopsis thaliana	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	9e-18	91	Glycine max	GmaAffx.91432.1.S1_x_at	CF807157	-	-	4e-3	At1g76930	ATEXT4 (EXTENSIN 4)	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	EBro08_SQ006_D12_s_at	EBro08_SQ006_D12	-	-	9e-1	At4g35720	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	OsAffx.23031.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	3e-5	50	Populus trichocarpa	PtpAffx.224886.1.S1_x_at	pmrna43793	hypothetical protein	-	2e-6	At1g26240	proline-rich extensin-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.93369.1.S1_at	BJ213884	-	-	1e-1	At3g59400	GUN4	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.16790.1.S1_at	AY110991.1	-	-	1e-2	At2g43150	proline-rich extensin-like family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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