Gene omics information

Query gene ID	1615700_at
Gene name	similar to VPS24.1
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1615700_at	CA809560	similar to VPS24.1	-	2e-8	At5g22950	VPS24.1	S.X.	H.G.	Please select
0.70	88.6	1607648_s_at	CB348223	hypothetical protein LOC100241287	-	1e-7	At1g08480	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1612973_s_at	CB914724	hypothetical protein LOC100267064	-	7e-43	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	S.X.	H.G.	Please select
0.60	81.9	1609981_at	CF207945	hypothetical protein LOC100247386	-	2e-11	At5g20910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.52	73.9	1618974_at	CF518903	hypothetical protein LOC100264692	-	9e-40	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.52	73.9	1606962_at	CF405430	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	S.X.	H.G.	Please select
0.52	73.9	1612704_at	CF403828	hypothetical protein LOC100262854	-	5e-66	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.49	69.3	1616805_s_at	CB969852	hypothetical protein LOC100253153	-	1e-11	At1g55170	unknown protein	S.X.	H.G.	Please select
0.49	69.3	1615438_at	CB979703	hypothetical protein LOC100267114	-	1e-25	At1g11475	NRPB10	S.X.	H.G.	Please select
0.46	66.5	1619404_at	CF373115	hypothetical protein LOC100242038	-	4e-38	At1g36980	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	95.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	3e-66	250	1619959_x_at	CF205806.1	-	-	1e+0	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.43	3e-66	250	1610898_at	CF205806.1	-	-	1e+0	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.07	2e-8	57	1617306_at	CA808681	similar to VPS24.1	-	2e-79	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.03	3e-1	34	1618718_at	BQ792420	hypothetical protein LOC100264252	-	3e-4	At2g35490	plastid-lipid associated protein PAP, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1616419_at	CD798271	hypothetical protein LOC100244325	-	1e-1	At1g11440	-	C.G.	S.X.	Please select
0.03	3e-1	34	1611356_at	CB348579	hypothetical protein LOC100242644	-	4e+0	At4g00600	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1621456_at	CF403507	hypothetical protein LOC100252628	-	5e-2	At2g36530	LOS2	C.G.	S.X.	Please select
0.03	1e+0	32	1619141_at	CD801026	-	-	2e-1	At5g42655	-	C.G.	S.X.	Please select
0.03	1e+0	32	1608918_at	BQ792513	hypothetical protein LOC100256015	-	2e-6	At2g24500	FZF	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-8	59	Arabidopsis thaliana	At5g22950	832359	VPS24.1	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-23	109	Glycine max	GmaAffx.85330.1.S1_s_at	BE822748	-	-	2e-29	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.07	1e-4	46	Hordeum vulgare	Contig5731_at	Contig5731	-	-	5e-4	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.11	9e-9	61	Oryza sativa	Os03g0108400	BX900155	-	Snf7 family protein	4e-3	At3g45000	VPS24.2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	9e-36	151	Populus trichocarpa	PtpAffx.217198.1.S1_at	pmrna32362	-	-	1e-99	At5g22950	VPS24.1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	TaAffx.29561.1.S1_at	CA639993	-	-	9e-1	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.07	1e-4	46	Zea mays	Zm.6583.1.A1_at	AY111761.1	hypothetical protein LOC100273289	-	2e-3	At3g45000	VPS24.2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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