Gene omics information

Query gene ID	1615595_at
Gene name	class I beta-1,3-glucanase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.3	1615595_at	AF239617.2	class I beta-1,3-glucanase	-	3e-3	At4g16260	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	S.X.	H.G.	Please select
0.73	90.8	1616822_at	AF220196.1	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	S.X.	H.G.	Please select
0.70	88.6	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	S.X.	H.G.	Please select
0.66	85.1	1607449_s_at	AY046416.1	proline-rich protein 1 /// proline rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.62	83.3	1618517_at	CB971627	hypothetical protein LOC100259328	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.61	83.2	1606705_at	CD721559	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.60	81.9	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	S.X.	H.G.	Please select
0.59	80.6	1621570_at	CB339408	hypothetical protein LOC100255693	-	4e-5	At2g34070	unknown protein	S.X.	H.G.	Please select
0.57	79.8	1614374_s_at	CB978592	similar to binding	-	2e-8	At2g29670	binding	S.X.	H.G.	Please select
0.57	79.8	1618771_s_at	CD715283	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	99.8	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.0	99.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.5	99.8	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.3	99.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.1	99.7	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
10.7	99.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.5	99.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.4	99.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.1	99.5	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.4	99.4	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-12	71	1618425_at	BQ795646	beta 1-3 glucanase	-	6e-1	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.09	8e-10	63	1620063_at	CB921343	beta-1,3-glucanase	-	2e+0	At3g63530	BB (BIG BROTHER)	C.G.	S.X.	Please select
0.10	8e-10	63	1610722_at	BQ797980	hypothetical protein LOC100255644	-	7e-2	At1g58122	CPuORF45 (Conserved peptide upstream open reading frame 45)	C.G.	S.X.	Please select
0.05	3e-3	42	1619916_s_at	CD715143	similar to beta-1,3-glucanase /// similar to beta-1,3-glucanase	-	5e+0	At4g09647	-	C.G.	S.X.	Please select
0.10	5e-2	38	1619828_at	CF371771	hypothetical protein LOC100260718	-	2e-1	At4g21213	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	1609204_at	CF607580	hypothetical protein LOC100242776	-	1e+0	At5g12240	unknown protein	C.G.	S.X.	Please select
0.01	5e-2	38	1607341_at	CB970018	hypothetical protein LOC100242887	-	1e-8	At3g16370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	7e-1	34	1622797_at	CF405307	similar to Al-induced protein	-	2e-22	At5g19140	AILP1	C.G.	S.X.	Please select
0.01	7e-1	34	1622559_at	CF606481	hypothetical LOC100244512	-	9e-22	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-3	44	Arabidopsis thaliana	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	Gma.2578.1.S1_at	BU578841	-	-	3e+0	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	Contig16187_at	Contig16187	-	-	6e-3	At2g27500	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	Os01g0947700	AK066757.1	-	Beta-1,3-glucanase	4e-1	At5g66780	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	6e-5	50	Populus trichocarpa	PtpAffx.4462.1.S1_a_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	36	Triticum aestivum	TaAffx.119315.2.S1_at	BJ277428	-	-	2e-1	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	C.G.	S.X.	Please select
0.02	7e-2	38	Zea mays	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage