Gene omics information

Query gene ID	1615516_at
Gene name	hypothetical protein LOC100255660
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	92.6	1615516_at	CF511735	hypothetical protein LOC100255660	-	5e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	S.X.	H.G.	Please select
0.59	80.6	1613706_at	CA808981	hypothetical protein LOC100258971	-	2e-15	At4g38930	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.57	79.8	1607761_at	CB974335	hypothetical protein LOC100247652	-	9e-5	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	S.X.	H.G.	Please select
0.54	75.7	1616240_at	CB348416	hypothetical protein LOC100263190	-	2e-2	At3g05760	nucleic acid binding / zinc ion binding	S.X.	H.G.	Please select
0.54	75.7	1614009_at	BQ797920	hypothetical protein LOC100242045	-	4e-19	At1g14000	VIK (VH1-INTERACTING KINASE)	S.X.	H.G.	Please select
0.53	75.2	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.53	75.2	1609191_s_at	CB978023	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	S.X.	H.G.	Please select
0.53	75.2	1617614_at	CF205963.1	-	-	2e-95	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please select
0.53	75.2	1615514_s_at	CF518509	hypothetical protein LOC100241557	-	1e-20	At5g47120	ATBI1 (BAX INHIBITOR 1)	S.X.	H.G.	Please select
0.52	73.9	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	1e-68	258	1610579_at	CF404677	-	-	3e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	C.G.	S.X.	Please select
0.02	4e-1	34	1614707_at	BQ799313	hypothetical protein LOC100251865	-	6e-41	At3g46970	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	C.G.	S.X.	Please select
0.04	4e-1	34	1610618_at	CB347516	hypothetical protein LOC100264520	-	3e-1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please select
0.02	1e+0	32	1621840_at	CB036000	-	-	4e-7	At1g64890	integral membrane transporter family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1620484_at	CD799248	-	-	3e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	C.G.	S.X.	Please select
0.01	1e+0	32	1619754_at	BQ800202	similar to cytochrome c oxidase family protein-like	-	3e-43	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1618056_at	BM437711	hypothetical protein LOC100240796	-	4e-7	At1g64890	integral membrane transporter family protein	C.G.	S.X.	Please select
0.01	1e+0	32	1610728_at	CA808724	-	-	1e-180	Atcg00800	-	C.G.	S.X.	Please select
0.02	1e+0	32	1607647_at	CF205104.1	-	-	1e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At4g11760	826782	LCR17 (Low-molecular-weight cysteine-rich 17)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	32	Glycine max	GmaAffx.75604.1.S1_at	AW307351	-	-	9e+0	At5g06265	hyaluronan mediated motility receptor-related	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEc0001C18f2_s_at	HVSMEc0001C18f2	-	-	7e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os04g0551500	AK068749.1	-	SBP domain containing protein	3e-3	At3g06410	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.81775.1.A1_at	CV273709	-	-	4e-4	At1g33120	60S ribosomal protein L9 (RPL90B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.48201.1.S1_x_at	CD886641	-	-	4e+0	At5g40750	-	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	Zm.9799.1.A1_at	AY111917.1	hypothetical protein LOC100217145	-	1e+0	At4g34870	ROC5 (ROTAMASE CYCLOPHILIN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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