Gene omics information

Query gene ID	1615458_at
Gene name	hypothetical protein LOC100255664
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615458_at	CB969727	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	S.X.	H.G.	Please select
0.56	79.4	1618355_at	CB837772	-	-	1e+0	At2g16750	protein kinase family protein	S.X.	H.G.	Please select
0.40	57.7	1607713_s_at	AF487826.1	serine hydrolase-like	-	1e-1	At4g26210	mitochondrial ATP synthase g subunit family protein	S.X.	H.G.	Please select
0.40	57.7	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.32	43.1	1618260_s_at	CD799434	hypothetical protein LOC100254518	-	3e-1	At1g73830	BEE3 (BR ENHANCED EXPRESSION 3)	S.X.	H.G.	Please select
0.30	39.4	1621937_at	CK138151.1	hypothetical protein LOC100245655	-	2e-1	At4g02810	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.4	100.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
25.8	100.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
23.2	100.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.3	99.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.6	99.9	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.8	99.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.1	99.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.9	99.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.6	98.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1618298_at	CB347158	hypothetical protein LOC100242042	-	9e-11	At1g09645	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	1615486_at	CF415476	hypothetical protein LOC100245706	-	7e-3	At5g15410	DND1 (DEFENSE NO DEATH 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1615039_s_at	CB342774	hypothetical protein LOC100251448	-	2e-90	At3g22110	PAC1	C.G.	S.X.	Please select
0.02	4e-1	34	1612117_at	CF212666	hypothetical protein LOC100258476	-	2e-33	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please select
0.02	2e+0	32	1620280_at	CF405833	hypothetical protein LOC100249491	-	6e+0	Atmg00840	-	C.G.	S.X.	Please select
0.02	2e+0	32	1617341_s_at	CF212973	hypothetical protein LOC100262769	-	1e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1615710_s_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.03	2e+0	32	1613520_at	CF372514	hypothetical protein LOC100257324	-	1e-6	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1612121_a_at	CF212973	hypothetical protein LOC100262769	-	1e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g16490	831510	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.68498.1.S1_at	BU964633	-	-	1e-2	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig3245_at	Contig3245	-	-	3e-14	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	C.G.	S.X.	Please select
0.04	7e-1	36	Oryza sativa	Os06g0325601	NM_195566.1	-	-	5e-1	At4g36370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-6	54	Populus trichocarpa	PtpAffx.62957.1.S1_at	CV259797	hypothetical protein	-	2e+0	At4g00250	DNA-binding storekeeper protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.141271.1.S1_at	CA690088	-	-	2e-1	At1g15330	CBS domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.12545.1.A1_at	AW172073	uracil phosphoribosyltransferase	-	3e+0	At2g32650	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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