Gene omics information

Query gene ID	1615428_at
Gene name	MADS-box protein 2
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	S.X.	H.G.	Please select
0.83	94.6	1607719_at	BQ799914	hypothetical protein LOC100253660	-	3e-10	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	S.X.	H.G.	Please select
0.53	75.2	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.47	67.7	1621723_at	CA817798	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	S.X.	H.G.	Please select
0.46	66.5	1617026_at	CD797284	-	-	2e-1	At2g43940	thiol methyltransferase, putative	S.X.	H.G.	Please select
0.32	43.1	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
12.4	99.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.2	99.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.7	99.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.8	99.5	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.2	99.4	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.9	99.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	6e-32	137	1613748_at	CD797578	AP1-like protein	-	4e-17	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.14	4e-27	121	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.12	9e-25	113	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.07	1e-8	59	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.03	7e-4	44	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.02	4e-2	38	1614956_at	CB349813	-	-	4e+0	At5g24610	unknown protein	C.G.	S.X.	Please select
0.06	4e-2	38	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please select
0.02	2e-1	36	1621968_at	CF405554	-	-	9e-18	At3g61070	PEX11E	C.G.	S.X.	Please select
0.02	2e-1	36	1621552_at	BM437510	hypothetical protein LOC100249249	-	9e-27	At3g24500	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-40	167	Arabidopsis thaliana	At5g15800	831436	SEP1 (SEPALLATA1)	Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	8e-41	169	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.16	1e-18	93	Hordeum vulgare	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.16	3e-29	131	Oryza sativa	Os09g0507200	U78892.1	-	MADS box protein	1e-20	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	3e-80	299	Populus trichocarpa	PtpAffx.9092.1.S1_s_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	5e-17	89	Triticum aestivum	Ta.14469.3.S1_a_at	BJ276784	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.12	2e-5	50	Zea mays	Zm.14912.1.S1_at	BQ703314	Zea mays MADS7	-	1e-2	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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