Gene omics information

Query gene ID	1615422_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615422_at	CB834352	-	-	1e+0	At4g19185	integral membrane family protein	S.X.	H.G.	Please select
0.27	34.0	1616791_at	CD716417	-	-	9e-1	At2g38025	-	S.X.	H.G.	Please select
0.03	4.2	1609741_at	CF512956	-	-	1e+0	At5g38314	unknown protein	S.X.	H.G.	Please select
0.01	2.1	1608823_at	CF205720.1	-	-	4e-7	At3g52660	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.00	0.5	1606492_s_at	CF513173	hypothetical protein LOC100245887	-	4e-35	At2g36620	RPL24A (ribosomal protein L24)	S.X.	H.G.	Please select
0.00	0.5	AFFX-r2-P1-cre-5_at	AFFX-r2-P1-cre-5	-	-	0			S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.8	100.0	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
18.5	99.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
15.5	99.9	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
12.9	99.8	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.9	99.7	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
7.7	99.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.8	99.0	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1346	1611635_at	CB834352	-	-	1e+0	At4g19185	integral membrane family protein	C.G.	S.X.	Please select
0.01	4e-1	34	1613772_s_at	BQ792569	hypothetical protein LOC100241957	-	6e-27	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1617415_at	BQ793878	-	-	4e-37	At3g26720	glycosyl hydrolase family 38 protein	C.G.	S.X.	Please select
0.01	2e+0	32	1615137_at	CB347116	hypothetical protein LOC100256319	-	6e-159	At1g56340	CRT1 (CALRETICULIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1611004_at	CF510607	hypothetical protein LOC100251807	-	2e+0	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.01	6e+0	30	1622638_x_at	X76892.1	hypothetical protein LOC100254891 /// similar to Stilbene synthase 2 /// stilbene synthase 2	-	2e-4	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.01	6e+0	30	1622606_at	CB910226	GDP-D-mannose pyrophosphorylase	-	4e-157	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.03	6e+0	30	1619329_at	CB343265	hypothetical protein LOC100248112	-	1e-21	At5g16140	peptidyl-tRNA hydrolase family protein	C.G.	S.X.	Please select
0.02	6e+0	30	1618127_at	CB968637	chlorophyll a/b binding protein	-	3e-46	At1g61520	LHCA3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At4g19185	827657	integral membrane family protein	F:unknown;P:unknown;C:membrane;BPOAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.62638.1.S1_at	BE330079	-	-	6e-2	At1g15810	ribosomal protein S15 family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig17281_at	Contig17281	-	-	3e-1	At3g61530	PANB2	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os06g0316800	AK062370.1	-	Glycine-rich protein (Fragment)	2e+0	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.217203.1.S1_at	pmrna32371	hypothetical protein	-	3e-17	At2g29940	PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.28917.2.S1_x_at	CA637102	-	-	9e-1	At3g19500	ethylene-responsive protein -related	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.5797.2.A1_a_at	BE050459	ultraviolet-B-repressible protein	-	9e-5	At2g06520	PSBX (photosystem II subunit X)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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