Gene omics information

Query gene ID	1615403_at
Gene name	hypothetical protein LOC100255828
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615403_at	CD798952	hypothetical protein LOC100255828	-	2e-1	At1g35537	-	S.X.	H.G.	Please select
0.80	93.6	1612208_at	CF608688	hypothetical protein LOC100255828	-	2e-6	At2g46620	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.44	64.1	1606793_at	CF606029	hypothetical protein LOC100255095	-	1e+0	At1g29850	double-stranded DNA-binding family protein	S.X.	H.G.	Please select
0.43	61.5	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	S.X.	H.G.	Please select
0.27	34.0	1607163_at	CF415171	hypothetical protein LOC100243654	-	4e+0	At5g55855	unknown protein	S.X.	H.G.	Please select
0.25	30.5	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.8	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
11.3	99.7	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
9.3	99.6	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
9.0	99.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
8.5	99.4	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1618129_at	BQ797409	hypothetical protein LOC100249509	-	2e+0	At5g25160	ZFP3 (ZINC FINGER PROTEIN 3)	C.G.	S.X.	Please select
0.03	3e-1	34	1617583_at	BQ797513	hypothetical protein LOC100247613	-	6e+0	At3g18740	60S ribosomal protein L30 (RPL30C)	C.G.	S.X.	Please select
0.03	3e-1	34	1615528_a_at	BQ797513	hypothetical protein LOC100247613	-	6e+0	At3g18740	60S ribosomal protein L30 (RPL30C)	C.G.	S.X.	Please select
0.03	1e+0	32	1620753_at	CD715216	-	-	1e+0	At3g05860	MADS-box protein (AGL45)	C.G.	S.X.	Please select
0.02	1e+0	32	1617331_at	CB348070	hypothetical protein LOC100242353	-	2e-12	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1616980_at	CD715216	-	-	1e+0	At3g05860	MADS-box protein (AGL45)	C.G.	S.X.	Please select
0.02	1e+0	32	1616959_a_at	CA817373	hypothetical protein LOC100268144	-	4e-41	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.02	5e+0	30	1620297_at	CD717258	-	-	1e-13	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1618943_at	CF516950	-	-	4e-1	At3g03010	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	36	Arabidopsis thaliana	At1g35537	3766949	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-2	40	Glycine max	Gma.13446.1.A1_at	BI967932	-	-	2e-1	At2g41870	remorin family protein	C.G.	S.X.	Please select
0.12	1e-7	56	Hordeum vulgare	Contig14475_s_at	Contig14475	-	-	3e-2	At4g12050	DNA-binding protein-related	C.G.	S.X.	Please select
0.07	3e-5	50	Oryza sativa	Os03g0114400	AK108730.1	-	AAA ATPase, central region domain containingprotein	9e-1	At5g44060	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	Ptp.6818.1.S1_s_at	DN499964	hypothetical protein	-	5e-1	At1g68320	MYB62 (myb domain protein 62)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	7e-8	57	Triticum aestivum	Ta.5392.1.A1_at	BG908604	-	-	3e-2	At4g12050	DNA-binding protein-related	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.14513.1.A1_at	CA828306	Histone H3.2	-	6e-37	At1g09200	histone H3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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