CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615340_at

Gene name similar to A_IG002N01.31 gene product

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1615340_at BQ799199 similar to A_IG002N01.31 gene product - 1e-30 At4g01050 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.67 87.9 1610544_s_at CB002886 hypothetical protein LOC100246662 - 1e-25 At4g01150 unknown protein S.X. H.G.
0.57 79.8 1611733_s_at BQ797982 hypothetical protein LOC100240928 - 2e-12 At1g03130 PSAD-2 (photosystem I subunit D-2) S.X. H.G.
0.50 72.7 1617646_at CB340164 hypothetical protein LOC100261565 - 4e-26 At5g16400 ATF2 S.X. H.G.
0.44 64.1 1620744_at CF403966 hypothetical protein LOC100248911 - 2e-6 At1g20340 DRT112 S.X. H.G.
0.31 41.3 1611683_s_at BQ799199 similar to A_IG002N01.31 gene product - 1e-30 At4g01050 hydroxyproline-rich glycoprotein family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 96.2 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
3.6 96.0 GSM147700 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 29
3.5 95.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.4 95.5 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
3.2 94.9 GSM147704 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 33
3.2 94.9 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
3.2 94.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.1 94.6 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
3.1 94.6 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.0 94.2 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 2708 1611683_s_at BQ799199 similar to A_IG002N01.31 gene product - 1e-30 At4g01050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.52 0 912 1606878_at CF204355.1 - - 4e+0 At4g21030 Dof-type zinc finger domain-containing protein C.G. S.X.
0.01 8e-1 34 1612480_at CB971929 hypothetical protein LOC100243071 - 1e-1 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.01 8e-1 34 1612290_s_at CF414427 hypothetical protein LOC100251359 - 1e-38 At3g49310 - C.G. S.X.
0.01 3e+0 32 1620310_at CA814688 hypothetical protein LOC100243380 - 4e-29 At5g05200 ABC1 family protein C.G. S.X.
0.01 3e+0 32 1619955_at CF511247 hypothetical protein LOC100265296 - 1e-5 At3g15970 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein C.G. S.X.
0.01 3e+0 32 1619995_at BQ796015 hypothetical protein LOC100259910 - 7e-19 At4g36800 RCE1 (RUB1 CONJUGATING ENZYME 1) C.G. S.X.
0.02 3e+0 32 1619817_at CD005811 - - 3e-4 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.01 3e+0 32 1619706_at CD801487 hypothetical protein LOC100255366 - 8e-18 At5g52370 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-30 135 Arabidopsis thaliana At4g01050 827921 hydroxyproline-rich glycoprotein family protein hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. - - - C.G. S.X.
0.14 1e-21 105 Glycine max GmaAffx.55399.1.S1_at AW200946 - - 2e-12 At4g01050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.05 1e-16 87 Hordeum vulgare Contig4700_at Contig4700 - - 1e-12 At4g01050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.09 6e-12 73 Oryza sativa Os.16733.1.S1_at - - - 0 C.G. S.X.
0.32 1e-70 268 Populus trichocarpa PtpAffx.83673.1.A1_at CA924495 hypothetical protein - 8e-33 At4g01050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.06 3e-6 54 Triticum aestivum Ta.22819.1.S1_x_at CK214031 - - 3e-7 At4g01050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.12 2e-8 59 Zea mays Zm.15895.1.A1_at BM347750 hypothetical protein LOC100192599 - 3e+0 At3g26400 EIF4B1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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