Gene omics information

Query gene ID	1615212_at
Gene name	ripening-related protein-like
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	S.X.	H.G.	Please select
0.83	94.6	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	S.X.	H.G.	Please select
0.83	94.6	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	S.X.	H.G.	Please select
0.80	93.6	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	S.X.	H.G.	Please select
0.67	87.9	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	S.X.	H.G.	Please select
0.50	72.7	1621698_at	BQ796130	similar to bHLH transcription factor Upa20	-	8e-2	At3g20510	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.8	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.0	99.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.9	99.7	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.1	99.6	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.0	99.6	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.9	99.6	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.7	99.6	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.5	99.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.3	99.6	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.9	99.5	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	3e-101	367	1607438_at	CF205386.1	-	-	6e+0	At5g64040	PSAN	C.G.	S.X.	Please select
0.03	4e-2	38	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	1622775_at	CF415430	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.01	6e-1	34	1619220_at	CA816725	hypothetical protein LOC100257112	-	3e-89	At1g23820	SPDS1 (spermidine synthase 1)	C.G.	S.X.	Please select
0.02	6e-1	34	1608271_at	CB340926	-	-	1e+0	At3g17280	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616874_at	CF415286	-	-	2e-18	At5g58250	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611600_at	CD719533	-	-	8e-18	At3g57000	nucleolar essential protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.02	2e+0	32	1608373_at	CF518730	hypothetical protein LOC100258699	-	4e+0	At5g05430	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g64040	836525	PSAN	Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.75429.1.S1_at	AW185255	-	-	1e+0	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	S0001100030D09F1_x_at	S0001100030D09F1	-	-	4e-2	At4g34180	cyclase family protein	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	OsAffx.3936.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-6	54	Populus trichocarpa	PtpAffx.205065.1.S1_at	pmrna10031	hypothetical protein	-	3e+0	At3g61580	delta-8 sphingolipid desaturase (SLD1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.78622.1.S1_at	CA729946	-	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zea mays	Zm.14951.1.S1_x_at	M36914.1	cell wall protein (put.); putative	-	5e-3	At2g30370	allergen-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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