CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615203_at

Gene name hypothetical protein LOC100258284

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1615203_at CA818658 hypothetical protein LOC100258284 - 7e-2 At5g57060 unknown protein S.X. H.G.
0.73 90.8 1610542_at CB972194 hypothetical protein LOC100254379 - 8e-83 At5g25760 PEX4 (PEROXIN4) S.X. H.G.
0.61 83.2 1618838_at CA814288 - - 2e-2 At3g59280 TXR1 (THAXTOMIN A RESISTANT 1) S.X. H.G.
0.33 45.7 1619375_at CD711519 hypothetical protein LOC100247352 - 3e-30 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) S.X. H.G.
0.25 30.5 1613031_at CF373574 hypothetical protein LOC100248106 - 1e-6 At1g33520 MOS2 (modifier of snc1, 2) S.X. H.G.
0.18 19.4 1618198_at CB007829 hypothetical protein LOC100242410 - 3e-1 At1g51200 zinc finger (AN1-like) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 95.5 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3 95.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.6 92.5 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5 91.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-9 59 1622596_s_at CD800869 hypothetical protein LOC100255931 - 1e-3 At5g57060 unknown protein C.G. S.X.
0.15 6e-9 59 1614430_at CD800869 hypothetical protein LOC100255931 - 1e-3 At5g57060 unknown protein C.G. S.X.
0.03 3e-1 34 1622016_at CF214587 - - 4e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.01 1e+0 32 1621002_at CF208524 hypothetical protein LOC100254244 - 6e-101 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) C.G. S.X.
0.04 1e+0 32 1620871_at CF511262 - - 2e+1 At5g56070 unknown protein C.G. S.X.
0.02 1e+0 32 1616808_at CF207742 hypothetical protein LOC100260085 - 6e+0 At1g32370 TOM2B (TOBAMOVIRUS MULTIPLICATION 2B) C.G. S.X.
0.02 1e+0 32 1615763_at CD714998 - - 8e+0 Atmg00240 - C.G. S.X.
0.03 1e+0 32 1612478_at CD802378 hypothetical protein LOC100262507 - 2e-2 At1g21570 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 1e+0 32 1611942_at CD714998 - - 8e+0 Atmg00240 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 7e-2 38 Arabidopsis thaliana At5g57060 835810 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.16 2e-15 83 Glycine max GmaAffx.5043.1.S1_at BM094229 - - 5e-2 At5g57060 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HX09G24r_at HX09G24r - - 3e+0 At3g02555 unknown protein C.G. S.X.
0.03 8e+0 32 Oryza sativa Os03g0286900 AK070872.1 - Low-temperature induced protein lt101.2 1e-9 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.15 6e-3 42 Populus trichocarpa PtpAffx.125257.1.S1_at CK099208 hypothetical protein - 5e-6 At5g57060 unknown protein C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.83393.1.S1_at CA658070 - - 3e+0 At3g61826 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1398.1.S1_at 40794996-73 - - 2e-1 At2g15500 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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