CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615170_s_at

Gene name hypothetical protein LOC100258503

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1615170_s_at CB005173 hypothetical protein LOC100258503 - 6e+0 At3g20750 zinc finger (GATA type) family protein S.X. H.G.
0.50 72.7 1614808_at BQ792403 hypothetical protein LOC100253735 - 2e-15 At1g53280 DJ-1 family protein S.X. H.G.
0.46 66.5 1619598_at BQ792469 hypothetical protein LOC100249152 - 1e+0 At4g03170 DNA binding S.X. H.G.
0.40 57.7 1619096_at CB969616 hypothetical protein LOC100262646 - 1e-7 At4g24270 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.37 51.7 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) S.X. H.G.
0.27 34.0 1622794_at CF211821 hypothetical protein LOC100254649 - 3e-6 At2g37200 integral membrane protein, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 96.4 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 2e-58 224 1616628_at CK136902.1 hypothetical protein LOC100258493 - 4e-3 At2g02060 transcription factor C.G. S.X.
0.58 2e-58 224 1611506_x_at CK136902.1 hypothetical protein LOC100258503 - 4e-3 At2g02060 transcription factor C.G. S.X.
0.02 4e-1 34 1607752_at CF513611 hypothetical protein LOC100259452 - 7e-12 At3g18490 aspartyl protease family protein C.G. S.X.
0.03 2e+0 32 1617078_at CD714471 hypothetical protein LOC100247052 - 3e-1 At1g10140 - C.G. S.X.
0.03 2e+0 32 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) C.G. S.X.
0.02 7e+0 30 1621354_at CD713565 - - 3e-1 At1g09760 U2A' (U2 small nuclear ribonucleoprotein A) C.G. S.X.
0.02 7e+0 30 1620713_s_at CB970375 flavonoid-related R2R3 MYB 4a repressor transcription factor - 3e-58 At4g38620 MYB4 C.G. S.X.
0.02 7e+0 30 1620235_at CF516998 hypothetical protein LOC100259078 - 2e-2 At3g32160 unknown protein C.G. S.X.
0.03 7e+0 30 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g20750 821623 zinc finger (GATA type) family protein F:transcription factor activity, sequence-specific DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM - - - C.G. S.X.
0.04 5e-1 36 Glycine max GmaAffx.33050.1.S1_x_at BE022504 - - 3e-2 At2g41410 calmodulin, putative C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig169_at Contig169 - - 1e-19 At4g14960 TUA6 C.G. S.X.
0.03 5e-2 40 Oryza sativa Os11g0294000 9639.m01752 - - 2e+0 At3g01260 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.210487.1.S1_at pmrna20577 hypothetical protein - 2e+0 Atmg01030 - C.G. S.X.
0.06 4e-1 36 Triticum aestivum TaAffx.111565.1.S1_x_at CA637653 - - 4e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) C.G. S.X.
0.04 4e-2 38 Zea mays Zm.3413.1.S1_at CA827149 - - 9e-19 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage