CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615129_at

Gene name hypothetical protein LOC100256954

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1615129_at CF518930 hypothetical protein LOC100256954 - 3e-11 At5g58240 bis(5'-adenosyl)-triphosphatase, putative S.X. H.G.
0.55 77.3 1619524_at CF517397 - - 6e-2 At5g13240 transcription regulator S.X. H.G.
0.35 48.5 1616020_a_at CA817685 hypothetical protein LOC100242210 /// hypothetical protein LOC100265608 - 1e+0 At3g62420 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) S.X. H.G.
0.30 39.4 1621021_at CF208345 hypothetical protein LOC100249161 - 2e-1 At5g56610 dual specificity protein phosphatase family protein S.X. H.G.
0.24 28.7 1611783_at BQ792690 hypothetical protein LOC100262520 - 1e+0 At2g43570 chitinase, putative S.X. H.G.
0.17 18.2 1615260_at CF372907 similar to FAD-binding domain-containing protein - 4e-4 At1g32310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
2.2 89.9 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
2.0 88.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.9 87.2 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 38 1620534_at BQ799259 hypothetical protein LOC100266322 - 7e-39 At5g11950 protein homodimerization C.G. S.X.
0.02 6e-1 34 1606707_at CF404598 hypothetical protein LOC100248187 - 2e-2 At2g41630 TFIIB (TRANSCRIPTION FACTOR II B) C.G. S.X.
0.02 2e+0 32 1620077_at CB002067 - - 2e+0 At1g53345 unknown protein C.G. S.X.
0.02 2e+0 32 1611283_at CB341968 hypothetical protein LOC100254717 - 2e-2 At4g23060 IQD22 (IQ-domain 22) C.G. S.X.
0.02 2e+0 32 1609562_at CF210167 hypothetical protein LOC100255509 - 5e-52 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) C.G. S.X.
0.02 2e+0 32 1607443_at CB002067 - - 2e+0 At1g53345 unknown protein C.G. S.X.
0.02 9e+0 30 1622667_at CF568939 - - 1e+0 At3g27329 - C.G. S.X.
0.02 9e+0 30 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - C.G. S.X.
0.02 9e+0 30 1621464_at CD715384 - - 4e-16 At5g10100 trehalose-6-phosphate phosphatase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-11 69 Arabidopsis thaliana At5g58240 835936 bis(5'-adenosyl)-triphosphatase, putative Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities. - - - C.G. S.X.
0.16 5e-17 89 Glycine max Gma.3688.1.S1_at BI784695 - - 1e-15 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.22 4e-3 42 Hordeum vulgare Contig11172_at Contig11172 - - 1e-10 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.14 1e-6 56 Oryza sativa Os11g0120600 AU162346 - Histidine triad (HIT) protein family protein 6e+0 At4g13195 CLE44 (CLAVATA3/ESR-RELATED 44) C.G. S.X.
0.34 2e-35 151 Populus trichocarpa PtpAffx.78798.1.S1_a_at CV237881 hypothetical protein - 1e-25 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.11 1e-7 57 Triticum aestivum Ta.7961.1.S1_at BQ161026 - - 1e-1 At1g23330 unknown protein C.G. S.X.
0.11 2e-10 65 Zea mays Zm.13459.1.A1_at CO532418 hypothetical protein LOC100279797 - 7e-12 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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