CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615105_s_at

Gene name hypothetical protein LOC100256979

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1615105_s_at CF568901 hypothetical protein LOC100256979 - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
0.50 72.7 1620213_at CB981229 hypothetical protein LOC100252268 - 5e-1 At1g13600 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) S.X. H.G.
0.46 66.5 1620044_s_at CF209634 hypothetical protein LOC100247307 - 7e-8 At5g61510 NADP-dependent oxidoreductase, putative S.X. H.G.
0.46 66.5 1612493_at BQ799979 hypothetical protein LOC100250837 - 3e-3 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative S.X. H.G.
0.40 57.7 1608087_s_at CF568810 glyceraldehyde-3-phosphate dehydrogenase - 2e-103 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) S.X. H.G.
0.39 54.9 1610193_at CF214569 hypothetical protein LOC100242819 - 1e-53 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 0 1247 1618385_at CF518525 hypothetical protein LOC100246711 - 0 At1g07940 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.44 0 670 1616420_at CF515326 hypothetical protein LOC100244821 - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.45 6e-176 615 1620764_a_at CB348714 hypothetical protein LOC100261589 - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.03 2e+0 32 1621059_at CF514079 - - 1e+0 At3g26800 unknown protein C.G. S.X.
0.01 2e+0 32 1619744_at CF208885 hypothetical protein LOC100249117 - 2e-94 At1g18070 EF-1-alpha-related GTP-binding protein, putative C.G. S.X.
0.02 2e+0 32 1617803_s_at CB002166 - - 2e-48 At1g68010 HPR C.G. S.X.
0.01 2e+0 32 1617382_s_at BQ799139 hypothetical protein LOC100262344 - 6e-174 At1g68010 HPR C.G. S.X.
0.03 2e+0 32 1615269_at CB004660 hypothetical protein LOC100245841 - 1e+0 At4g15250 zinc finger (B-box type) family protein C.G. S.X.
0.02 2e+0 32 1612378_at CA817821 - - 6e-95 At1g68010 HPR C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 712 Arabidopsis thaliana At1g07930 837308 elongation factor 1-alpha / EF-1-alpha F:calmodulin binding, translation elongation factor activity;P:translational elongation;C:mitochondrion, vacuole;BMOFPAV - - - C.G. S.X.
0.60 0 694 Glycine max GmaAffx.90998.1.S1_s_at CF808533 - - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.50 0 694 Hordeum vulgare Contig397_x_at Contig397 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.43 0 652 Oryza sativa Os03g0177500 D63583.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.71 0 688 Populus trichocarpa Ptp.1861.1.S1_x_at CN549959 hypothetical protein - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.50 9e-110 397 Triticum aestivum TaAffx.86841.1.S1_x_at CA599862 - - 2e-150 At5g60390 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.49 0 640 Zea mays Zm.3892.3.A1_at AF136829.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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