Gene omics information

Query gene ID	1615081_at
Gene name	hypothetical protein LOC100252838
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.0	1615081_at	CF210891	hypothetical protein LOC100252838	-	2e-17	At3g16090	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	87.9	1618387_at	CF215295	hypothetical protein LOC100249044	-	4e-25	At2g01970	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.50	72.7	1610672_at	CF517656	hypothetical protein LOC100265163	-	6e-50	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	S.X.	H.G.	Please select
0.47	67.7	1612451_at	CF609753	monodehydroascorbate reductase	-	3e-22	At3g52880	monodehydroascorbate reductase, putative	S.X.	H.G.	Please select
0.40	57.7	1618692_at	CF212642	hypothetical protein LOC100266362	-	4e-13	At1g24560	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1611869_at	CF609640	hypothetical protein LOC100254356	-	5e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.32	43.1	1620859_at	CF512570	hypothetical protein LOC100245328	-	2e-33	At3g14860	NHL repeat-containing protein	S.X.	H.G.	Please select
0.23	27.5	1613190_at	CF604163	hypothetical protein LOC100244118	-	2e-2	At1g16560	Per1-like family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.2	98.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	1608974_at	CB343752	-	-	1e+0	At5g40700	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1607680_at	CD801083	hypothetical protein LOC100253490	-	2e-12	At1g01225	NC domain-containing protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	1621452_at	CF514057	-	-	1e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	1618805_at	CB837735	-	-	6e+0	At4g33720	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1614999_at	CB837735	-	-	6e+0	At4g33720	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1614667_at	CB976778	hypothetical protein LOC100243706	-	4e-6	At2g44200	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1613886_at	BQ796226	hypothetical protein LOC100257655	-	4e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	5e+0	30	1611185_at	CB978682	hypothetical protein LOC100258822	-	4e-30	At2g41900	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1610256_at	CD711629	-	-	2e-15	At4g26701	DNA binding / DNA topoisomerase type I	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-17	89	Arabidopsis thaliana	At3g16090	820854	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.23199.1.S1_at	BF014650	-	-	3e+0	At2g35090	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig13249_at	Contig13249	-	-	3e+0	At4g33690	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0633900	9635.m04418	-	-	1e+0	At1g51400	photosystem II 5 kD protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	1e-25	117	Populus trichocarpa	PtpAffx.151309.1.S1_s_at	DN501290	hypothetical protein	-	7e-12	At3g16090	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.29625.1.S1_at	CA638741	-	-	8e+0	At4g24026	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.951.1.S1_at	AI833422	-	-	8e-1	At1g60970	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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