CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1615078_at

Gene name hypothetical protein LOC100261569

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1615078_at CA818550 hypothetical protein LOC100261569 - 3e-5 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) S.X. H.G.
0.57 79.8 1615275_at BQ797243 hypothetical protein LOC100241984 - 3e+0 At4g02733 - S.X. H.G.
0.57 79.8 1618986_at BQ796459 similar to Not CCR4-Not complex component, N-terminal; tRNA-binding arm - 3e-19 At5g18230 transcription regulator NOT2/NOT3/NOT5 family protein S.X. H.G.
0.38 53.6 1617406_s_at CF415339 hypothetical protein LOC100266010 - 2e-8 At3g07220 transcriptional activator, putative S.X. H.G.
0.37 51.7 1608653_at CB975644 hypothetical protein LOC100263217 - 5e+0 At4g15020 DNA binding / protein dimerization S.X. H.G.
0.32 43.1 1621779_s_at BQ794980 hypothetical protein LOC100244148 - 6e-40 At3g52560 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) S.X. H.G.
0.30 39.4 1620693_at CF513433 - - 1e-12 At2g22730 transporter-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436375 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.1 89.1 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436417 V. riparia (VR, PI588259) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-6 50 1609773_at CB978867 hypothetical protein LOC100261732 - 1e+0 At3g11600 unknown protein C.G. S.X.
0.03 1e-4 46 1607700_at CB345471 hypothetical protein LOC100260289 - 2e-3 At4g02160 unknown protein C.G. S.X.
0.03 6e-4 44 1612079_at CF403163 - - 1e-1 At4g33467 unknown protein C.G. S.X.
0.03 2e-3 42 1609571_at BQ795107 hypothetical protein LOC100258119 - 6e-12 At4g36860 zinc ion binding C.G. S.X.
0.02 9e-3 40 1616593_at BQ797679 hypothetical protein LOC100244926 - 5e-54 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) C.G. S.X.
0.03 9e-3 40 1613432_at CF516959 hypothetical protein LOC100244217 - 1e-15 At1g67680 7S RNA binding C.G. S.X.
0.03 9e-3 40 1608560_at CF405443 hypothetical protein LOC100250989 - 3e+0 At3g09890 ankyrin repeat family protein C.G. S.X.
0.03 4e-2 38 1622645_at CF208259 hypothetical protein LOC100245405 - 1e-83 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) C.G. S.X.
0.03 4e-2 38 1618732_at BQ792959 - - 2e-8 At3g49140 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-5 50 Arabidopsis thaliana At3g49470 824109 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAVB - - - C.G. S.X.
0.05 1e-2 42 Glycine max PsAffx.C80000063_at PsAffx.C80000063 - - 2e-5 At2g21420 zinc finger protein-related C.G. S.X.
0.04 2e-4 46 Hordeum vulgare Contig2590_at Contig2590 - - 4e-32 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.04 4e-3 44 Oryza sativa Os02g0184100 AK073734.1 - Conserved hypothetical protein 2e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.20 8e-16 85 Populus trichocarpa PtpAffx.5506.1.S1_at BU872766 hypothetical protein - 4e-5 At3g50690 leucine-rich repeat family protein C.G. S.X.
0.05 2e-3 44 Triticum aestivum Ta.28822.2.S1_at CA612903 - - 4e+0 At5g46013 unknown protein C.G. S.X.
0.09 1e-2 40 Zea mays Zm.6201.1.A1_at BE643575 - - 1e-1 At3g50690 leucine-rich repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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