Gene omics information

Query gene ID	1615029_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1615029_at	BQ796543	-	-	3e-34	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	S.X.	H.G.	Please select
0.67	87.9	1616117_at	CD800851	hypothetical protein LOC100252991	-	2e-70	At2g18390	TTN5 (TITAN 5)	S.X.	H.G.	Please select
0.60	81.9	1621679_at	CB003331	similar to Os11g0657300	-	4e-22	At2g14285	-	S.X.	H.G.	Please select
0.46	66.5	1613068_at	BQ793388	hypothetical protein LOC100266457	-	1e+0	At1g22590	MADS-box family protein	S.X.	H.G.	Please select
0.35	48.5	1609096_at	CB920175	hypothetical protein LOC100265274	-	7e-15	At3g13882	structural constituent of ribosome	S.X.	H.G.	Please select
0.30	39.4	1607214_at	CB347082	hypothetical protein LOC100247783	-	2e-42	At2g23930	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)	S.X.	H.G.	Please select
0.27	34.0	1616265_s_at	CF208531	-	-	4e-20	At3g05060	SAR DNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	8e-128	456	1620089_at	CF512740	hypothetical protein LOC100264325	-	2e-15	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.32	3e-99	361	1620585_at	CF609025	hypothetical protein LOC100264325	-	1e-43	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.14	1e-40	167	1622691_s_at	AF176496.1	hypothetical protein LOC100264325	-	7e-13	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.14	1e-40	167	1619876_at	AF176496.1	-	-	7e-13	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	3e-1	36	1618063_at	CB980274	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.01	3e-1	36	1610789_at	CF204523.1	similar to F2D10.18	-	7e-9	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.01	3e-1	36	1607212_s_at	CF513231	similar to F2D10.18	-	2e-10	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.01	1e+0	34	1621529_at	CB344685	hypothetical protein LOC100254980	-	6e-2	At1g62840	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	1618377_at	CF414676	-	-	5e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	3e-34	147	Arabidopsis thaliana	At1g57720	842147	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	F:copper ion binding, translation elongation factor activity;P:response to cadmium ion;C:cell wall, plasma membrane, vacuole, membrane;BOMPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	5e-77	289	Glycine max	Gma.322.1.S1_a_at	AF475939.1	elongation factor 1-gamma	-	5e-20	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.40	4e-38	159	Hordeum vulgare	Contig1194_at	Contig1194	-	-	7e-32	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.45	1e-38	163	Oryza sativa	Os02g0220500	AK104946.1	-	Elongation factor 1-gamma (EF-1-gamma) (eEF-1Bgamma)	1e-52	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	2e-94	347	Populus trichocarpa	Ptp.157.1.S1_s_at	CV241931	hypothetical protein	-	5e-39	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	4e-37	157	Triticum aestivum	Ta.27789.1.S1_x_at	CD920668	-	-	9e-35	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.42	2e-67	256	Zea mays	Zm.6848.1.A1_s_at	AI615252	elongation factor 1-gamma 2	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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