CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614966_at

Gene name similar to pumilio domain-containing protein PPD1

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1614966_at BQ796346 similar to pumilio domain-containing protein PPD1 - 1e-9 At2g29190 APUM2 (Arabidopsis Pumilio 2) S.X. H.G.
0.75 91.3 1608653_at CB975644 hypothetical protein LOC100263217 - 5e+0 At4g15020 DNA binding / protein dimerization S.X. H.G.
0.67 87.9 1622765_at CF405914 - - 4e+0 At3g59450 calcium-binding EF hand family protein S.X. H.G.
0.61 83.2 1617655_at CB348593 hypothetical protein LOC100262391 - 5e-10 At3g16620 ATTOC120 S.X. H.G.
0.53 75.2 1616867_at CF405655 hypothetical protein LOC100254223 - 2e-17 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) S.X. H.G.
0.53 75.2 1617406_s_at CF415339 hypothetical protein LOC100266010 - 2e-8 At3g07220 transcriptional activator, putative S.X. H.G.
0.46 66.5 1619282_at CB971606 hypothetical protein LOC100252267 - 5e-75 At4g21710 NRPB2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.8 93.4 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.2 89.9 GSM436375 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 38 1616245_at CF215646 - - 5e-7 At1g76160 sks5 (SKU5 Similar 5) C.G. S.X.
0.03 3e-1 34 1618409_at CF514784 hypothetical protein LOC100257325 - 1e-1 At4g34480 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.02 1e+0 32 1622229_at CB002825 - - 6e+0 At5g16640 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 1e+0 32 1618435_at CB002825 - - 6e+0 At5g16640 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+0 32 1618004_s_at CB339217 AlaT1 - 2e-110 At1g70580 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) C.G. S.X.
0.03 1e+0 32 1616759_at BQ799677 hypothetical protein LOC100244675 - 9e-26 At3g18430 calcium-binding EF hand family protein C.G. S.X.
0.03 1e+0 32 1616446_at CB978171 hypothetical protein LOC100265064 - 3e-67 At2g29140 APUM3 (Arabidopsis Pumilio 3) C.G. S.X.
0.02 1e+0 32 1608205_at CA817318 similar to Elongation factor Tu, chloroplastic - 1e-76 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) C.G. S.X.
0.01 1e+0 32 1606795_at CB339217 AlaT1 - 2e-110 At1g70580 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-9 63 Arabidopsis thaliana At2g29190 817468 APUM2 (Arabidopsis Pumilio 2) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPB - - - C.G. S.X.
0.08 7e-9 61 Glycine max GmaAffx.71225.1.S1_at BG238413 - - 2e-8 At3g20250 APUM5 (Arabidopsis Pumilio 5) C.G. S.X.
0.04 3e-2 38 Hordeum vulgare Contig24225_at Contig24225 - - 2e-12 At3g10360 APUM4 (Arabidopsis Pumilio 4) C.G. S.X.
0.05 2e-3 44 Oryza sativa Os02g0819300 CB671807 - ARM repeat fold domain containing protein 1e-7 At2g29140 APUM3 (Arabidopsis Pumilio 3) C.G. S.X.
0.22 1e-7 57 Populus trichocarpa PtpAffx.63786.1.A1_at CV227640 hypothetical protein - 5e-3 At3g20250 APUM5 (Arabidopsis Pumilio 5) C.G. S.X.
0.07 3e-13 75 Triticum aestivum Ta.9979.1.S1_at BJ241324 - - 7e-6 At4g25880 APUM6 (Arabidopsis Pumilio 6) C.G. S.X.
0.07 3e-8 57 Zea mays Zm.4380.1.A1_at AY105814.1 Hypothetical protein LOC100193145 - 5e-10 At2g29200 APUM1 (Arabidopsis Pumilio 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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