Gene omics information

Query gene ID	1614965_at
Gene name	MADS-box protein 4
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	S.X.	H.G.	Please select
0.83	94.6	1621644_at	CB004591	-	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.83	94.6	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	S.X.	H.G.	Please select
0.73	90.8	1612107_at	CF405996	hypothetical protein LOC100248597	-	6e+0	At5g18040	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1611561_a_at	CD800254	hypothetical protein LOC100240998	-	2e-2	At4g36850	-	S.X.	H.G.	Please select
0.50	72.7	1613204_at	AF501625.1	glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917	-	4e-8	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.4	99.6	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.0	99.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.7	99.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.5	99.4	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.9	99.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.6	99.3	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-56	220	1615928_at	CF405388	-	-	3e+0	At4g15093	catalytic LigB subunit of aromatic ring-opening dioxygenase family	C.G.	S.X.	Please select
0.08	3e-26	119	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.12	2e-24	113	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.08	1e-15	83	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.04	3e-10	65	1621420_at	AY275713.1	FUL-like protein	-	5e-38	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.06	1e-9	63	1612798_at	CB004353	-	-	2e+0	At5g01225	unknown protein	C.G.	S.X.	Please select
0.06	1e-9	63	1609027_at	CB004353	hypothetical protein LOC100253650	-	2e+0	At5g01225	unknown protein	C.G.	S.X.	Please select
0.07	5e-3	42	1613748_at	CD797578	AP1-like protein	-	4e-17	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.05	2e-2	40	1619977_at	BQ794993	hypothetical protein LOC100251508	-	3e-27	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	6e-36	153	Arabidopsis thaliana	At1g24260	839040	SEP3 (SEPALLATA3)	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	3e-32	141	Glycine max	GmaAffx.52757.1.S1_at	BQ785411	MADS transcription factor	-	9e-40	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.10	2e-25	117	Hordeum vulgare	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.11	3e-18	95	Oryza sativa	OsAffx.12827.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	1e-99	365	Populus trichocarpa	PtpAffx.50213.1.S1_at	AY235222.1	hypothetical protein	-	2e-75	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	9e-26	119	Triticum aestivum	Ta.13865.1.S1_at	AF543316.1	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.09	4e-23	109	Zea mays	Zm.14912.1.S1_at	BQ703314	Zea mays MADS7	-	1e-2	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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