Gene omics information

Query gene ID	1614956_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1614956_at	CB349813	-	-	4e+0	At5g24610	unknown protein	S.X.	H.G.	Please select
0.23	27.5	1619904_at	CB974700	-	-	8e-42	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.18	19.4	1620076_s_at	CA809762	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	S.X.	H.G.	Please select
0.17	18.2	1616941_at	CD713937	hypothetical protein LOC100248410	-	2e-39	At1g07830	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.13	13.3	1616827_at	BQ793335	hypothetical protein LOC100254067	-	6e-27	At4g24550	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.05	6.0	1622378_s_at	CB974439	hypothetical protein LOC100252146	-	5e-10	At5g54855	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.5	99.9	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
8.3	99.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.8	99.3	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.8	99.3	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.6	99.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.1	99.1	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.5	98.4	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
5.3	98.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	6e-95	345	1621813_at	CA817946	-	-	3e-1	At1g06620	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.60	2e-94	343	1615043_at	CF207020.1	-	-	2e-8	At5g43450	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.28	6e-21	99	1621924_at	CA817352	-	-	4e+0	At5g49260	unknown protein	C.G.	S.X.	Please select
0.15	1e-6	52	1615262_at	CF201207.1	-	-	5e+0	At1g79810	TED3 (REVERSAL OF THE DET PHENOTYPE 3)	C.G.	S.X.	Please select
0.15	1e-6	52	1613497_x_at	CF201207.1	-	-	5e+0	At1g79810	TED3 (REVERSAL OF THE DET PHENOTYPE 3)	C.G.	S.X.	Please select
0.06	3e-4	44	1616227_at	CD012233	-	-	1e-4	At5g43450	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.02	2e-2	38	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.03	1e+0	32	1619738_at	CB002730	-	-	2e-2	At3g07565	DNA binding	C.G.	S.X.	Please select
0.03	1e+0	32	1619290_at	CF214465	-	-	4e+0	At5g13825	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g24610	832532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.76494.1.S1_at	AW309024	-	-	7e-20	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig17028_at	Contig17028	-	-	2e+0	At3g16175	thioesterase family protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.2507.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.50616.1.A1_at	CV239482	hypothetical protein	-	1e-10	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.55466.1.S1_at	CA665631	-	-	8e+0	At5g42504	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.3212.1.A1_at	AY111219.1	golgi SNARE 12 protein	-	9e-1	At4g39460	SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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