Gene omics information

Query gene ID	1614949_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	93.7	1614949_x_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	S.X.	H.G.	Please select
0.63	84.3	1622564_at	BM437316	hypothetical protein LOC100260573	-	1e-35	At1g58684	40S ribosomal protein S2, putative	S.X.	H.G.	Please select
0.36	50.7	1622177_s_at	CF972322.1	hypothetical protein LOC100260347	-	2e+0	At2g40745	unknown protein	S.X.	H.G.	Please select
0.32	43.1	1622599_s_at	CF212773	hypothetical protein LOC100259736	-	1e-44	At1g70600	structural constituent of ribosome	S.X.	H.G.	Please select
0.26	32.0	1616919_s_at	CF516508	hypothetical protein LOC100253219	-	6e-15	At1g15250	60S ribosomal protein L37 (RPL37A)	S.X.	H.G.	Please select
0.22	25.6	1607140_at	CF514982	similar to 40S ribosomal S4 protein	-	5e-94	At5g07090	40S ribosomal protein S4 (RPS4B)	S.X.	H.G.	Please select
0.22	25.6	1617969_at	CB344991	hypothetical protein LOC100260774	-	3e-10	At4g28450	nucleotide binding / protein binding	S.X.	H.G.	Please select
0.21	24.0	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.20	22.4	1619625_s_at	CF214740	hypothetical protein LOC100242662	-	9e-24	At3g55750	60S ribosomal protein L35a (RPL35aD)	S.X.	H.G.	Please select
0.17	18.2	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.6	92.5	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.4	91.3	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.3	90.7	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	4e-166	581	1618288_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.90	4e-166	581	1609803_s_at	CF202459.1	hypothetical protein LOC100255637	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.57	1e-144	510	1622420_at	CF372296	hypothetical protein LOC100255637	-	8e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.53	4e-61	232	1610377_at	CF413900	-	-	5e-1	At5g54410	unknown protein	C.G.	S.X.	Please select
0.13	9e-19	91	1621849_at	CF203866.1	hypothetical protein LOC100249556	-	2e-5	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.13	9e-19	91	1610734_s_at	BQ798102	hypothetical protein LOC100249556	-	3e-5	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.14	1e-14	77	1613008_at	CF415576	hypothetical protein LOC100261912	-	5e-3	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.02	2e-1	34	1618313_at	CB339184	hypothetical protein LOC100245567	-	4e-2	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.02	2e-1	34	1612199_s_at	CB349069	hypothetical protein LOC100249014	-	2e-7	At5g63530	ATFP3	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-3	42	Arabidopsis thaliana	At1g01100	839410	60S acidic ribosomal protein P1 (RPP1A)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	6e-8	57	Glycine max	Gma.11150.1.S1_x_at	AW317399	-	-	3e-1	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.10	2e-2	38	Hordeum vulgare	Contig1487_at	Contig1487	-	-	3e-1	At5g24510	60s acidic ribosomal protein P1, putative	C.G.	S.X.	Please select
0.07	2e-2	40	Oryza sativa	Os.46916.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-5	50	Populus trichocarpa	PtpAffx.90967.2.S1_s_at	CA821599	hypothetical protein	-	5e-6	At3g49460	60S acidic ribosomal protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-1	36	Triticum aestivum	TaAffx.112051.1.S1_x_at	CA627432	-	-	6e-2	At5g24510	60s acidic ribosomal protein P1, putative	C.G.	S.X.	Please select
0.20	7e-5	46	Zea mays	ZmAffx.262.1.A1_s_at	AI670379	acidic ribosomal protein P3	-	3e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage