CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614838_at

Gene name hypothetical protein LOC100244335

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 64.1 1614838_at CB977099 hypothetical protein LOC100244335 - 1e-4 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) S.X. H.G.
0.91 98.8 AFFX-Vvi-actin-5_at - actin 1 - 0 S.X. H.G.
0.73 90.8 1614946_at CF510992 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) S.X. H.G.
0.73 90.8 1614631_at CB979660 hypothetical protein LOC100254376 - 1e-137 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) S.X. H.G.
0.67 87.9 1617936_at BQ797736 similar to 26S proteasome subunit RPN5b - 3e-23 At5g64760 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) S.X. H.G.
0.67 87.9 1620627_at CF214379 hypothetical protein LOC100259195 - 1e-22 At1g20110 zinc finger (FYVE type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 97.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 32 1620150_at CA812792 hypothetical protein LOC100254773 - 9e-8 At1g64810 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) C.G. S.X.
0.03 2e+0 32 1618885_at CB339428 - - 4e+0 At4g19630 heat shock factor protein-related / heat shock transcription factor-related C.G. S.X.
0.03 2e+0 32 1617889_at BQ792926 - - 4e+0 At3g53370 DNA-binding S1FA family protein C.G. S.X.
0.03 2e+0 32 1616012_at CF413967 hypothetical protein LOC100263474 - 8e-1 At5g03400 unknown protein C.G. S.X.
0.03 2e+0 32 1614743_at CB009200 hypothetical protein LOC100264020 - 2e-1 At2g47790 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.05 2e+0 32 1613198_at CF209840 - - 4e-3 At1g27640 unknown protein C.G. S.X.
0.02 2e+0 32 1607522_at CD721206 - - 9e-8 At1g64810 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) C.G. S.X.
0.01 7e+0 30 1622824_at BQ794106 hypothetical protein LOC100266096 - 5e-73 At4g00720 ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) C.G. S.X.
0.03 7e+0 30 1622157_at CF404210 hypothetical protein LOC100259322 - 3e-4 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-4 48 Arabidopsis thaliana At1g43640 840948 AtTLP5 (TUBBY LIKE PROTEIN 5) Member of TLP family - - - C.G. S.X.
0.04 9e-3 42 Glycine max Gma.2796.1.S1_at BU549358 - - 1e-18 At2g47900 AtTLP3 (TUBBY LIKE PROTEIN 3) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEf0020M22r2_at HVSMEf0020M22r2 - - 3e+0 At1g34770 MAGE-8 antigen-related C.G. S.X.
0.03 1e-2 42 Oryza sativa Os01g0759100 AK106853.1 - Tubby family protein 2e-1 At5g18680 AtTLP11 (TUBBY LIKE PROTEIN 11) C.G. S.X.
0.10 9e-6 52 Populus trichocarpa PtpAffx.42898.1.S1_at CV241906 - - 2e-2 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.106625.1.S1_at CA714750 - - 5e-8 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) C.G. S.X.
0.06 1e-2 40 Zea mays Zm.4733.1.A1_at CD441088 hypothetical protein LOC100193930 - 2e-14 At1g76900 AtTLP1 (TUBBY LIKE PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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