Gene omics information

Query gene ID	1614819_at
Gene name	hypothetical protein LOC100259847
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1614819_at	CF513559	hypothetical protein LOC100259847	-	2e-11	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	S.X.	H.G.	Please select
0.80	93.6	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	S.X.	H.G.	Please select
0.50	72.7	1611262_at	CD013610	hypothetical protein LOC100244343	-	1e+0	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	S.X.	H.G.	Please select
0.47	67.7	1614751_at	CA809521	hypothetical protein LOC100241010	-	5e-37	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please select
0.38	53.6	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	S.X.	H.G.	Please select
0.31	41.3	1619019_at	CF213490	hypothetical protein LOC100243336	-	2e-102	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1618613_at	BQ795651	hypothetical protein LOC100245552	-	6e-7	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	C.G.	S.X.	Please select
0.03	3e-1	34	1615255_at	CF405695	-	-	4e+0	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.01	1e+0	32	1621565_s_at	CF516181	hypothetical protein LOC100252623	-	5e-70	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1620828_at	CB976899	hypothetical protein LOC100260245	-	6e-6	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	C.G.	S.X.	Please select
0.02	1e+0	32	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.02	1e+0	32	1617687_at	CB981123	hypothetical protein LOC100265217	-	4e-1	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	C.G.	S.X.	Please select
0.03	1e+0	32	1616475_at	CB971048	hypothetical protein LOC100243281 /// hypothetical protein LOC100265589	-	2e-1	At4g02830	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1613418_at	CF608130	hypothetical protein LOC100255378	-	3e-17	At5g58430	ATEXO70B1 (exocyst subunit EXO70 family protein B1)	C.G.	S.X.	Please select
0.02	1e+0	32	1610679_at	CF604560	hypothetical protein LOC100261250	-	6e-4	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-11	69	Arabidopsis thaliana	At1g71860	843516	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-26	119	Glycine max	Gma.135.1.S1_at	AJ006308.1	tyrosine phosphatase 1	-	3e-34	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig23195_at	Contig23195	-	-	1e+0	At2g41550	transcription termination factor	C.G.	S.X.	Please select
0.03	6e-4	46	Oryza sativa	Os.5944.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	1e-44	180	Populus trichocarpa	PtpAffx.21888.1.A1_a_at	CK096334	hypothetical protein	-	2e-24	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-5	48	Triticum aestivum	Ta.28628.1.A1_at	BQ162670	-	-	6e+0	At3g22260	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.5759.1.A1_at	BM075398	-	-	5e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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