CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614808_at

Gene name hypothetical protein LOC100253735

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1614808_at BQ792403 hypothetical protein LOC100253735 - 2e-15 At1g53280 DJ-1 family protein S.X. H.G.
0.46 66.5 1619598_at BQ792469 hypothetical protein LOC100249152 - 1e+0 At4g03170 DNA binding S.X. H.G.
0.40 57.7 1619096_at CB969616 hypothetical protein LOC100262646 - 1e-7 At4g24270 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.38 53.6 1622794_at CF211821 hypothetical protein LOC100254649 - 3e-6 At2g37200 integral membrane protein, putative S.X. H.G.
0.35 48.5 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) S.X. H.G.
0.22 25.6 1622704_at BQ800356 hypothetical protein LOC100254227 - 6e-18 At1g69670 CUL3B (CULLIN 3B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 97.3 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-36 151 1621673_at CD010829 - - 5e-3 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.10 4e-36 151 1617904_at CD010829 - - 5e-3 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.02 4e-2 38 1609784_s_at CA813947 hypothetical protein LOC100261841 - 9e-22 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 1e-1 36 1618933_at CF208806 - - 8e-24 At4g04920 SFR6 (SENSITIVE TO FREEZING 6) C.G. S.X.
0.02 1e-1 36 1613264_at CF201648.1 - - 5e+0 At2g10930 unknown protein C.G. S.X.
0.02 6e-1 34 1617047_at BQ792281 hypothetical protein LOC100267506 - 6e-22 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.02 6e-1 34 1612140_at CD798360 hypothetical protein LOC100254487 - 1e-17 At1g03250 unknown protein C.G. S.X.
0.02 2e+0 32 1621597_at CB839537 - - 1e+0 At4g35987 unknown protein C.G. S.X.
0.01 2e+0 32 1620796_at CF208990 hypothetical LOC100245990 - 4e-5 At3g24315 AtSec20 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 2e-15 83 Arabidopsis thaliana At1g53280 841762 DJ-1 family protein F:unknown;P:biological_process unknown;C:chloroplast;BMOAPF - - - C.G. S.X.
0.43 7e-47 188 Glycine max GmaAffx.91943.1.S1_at CF807475 - - 1e-3 At1g53280 DJ-1 family protein C.G. S.X.
0.10 2e-11 69 Hordeum vulgare Contig9055_at Contig9055 - - 9e-1 At3g14990 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative C.G. S.X.
0.10 4e-6 54 Oryza sativa Os06g0531200 AK060016.1 - DJ-1 family protein 5e-2 At3g14990 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative C.G. S.X.
0.40 2e-105 383 Populus trichocarpa Ptp.3088.1.S1_at CK093719 hypothetical protein - 3e-15 At1g53280 DJ-1 family protein C.G. S.X.
0.07 3e-8 59 Triticum aestivum Ta.29202.2.A1_at CA682462 - - 4e+0 At4g40060 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16) C.G. S.X.
0.03 1e-8 59 Zea mays Zm.4980.1.A1_at CF626828 hypothetical protein LOC100276552 - 3e-2 At3g14990 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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