Gene omics information

Query gene ID	1614798_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1614798_at	CF568817	-	-	2e-1	At5g21050	-	S.X.	H.G.	Please select
0.17	18.2	1613751_at	CF206739.1	-	-	5e-15	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please select
0.03	4.2	1617546_at	CB005059	-	-	5e-3	At4g23850	long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase	S.X.	H.G.	Please select
0.02	3.2	1621202_at	BQ792918	hypothetical protein LOC100267221	-	2e-11	At3g54390	transcription factor	S.X.	H.G.	Please select
0.02	3.2	1620229_at	CF202844.1	-	-	5e+0	At4g27660	unknown protein	S.X.	H.G.	Please select
0.00	0.5	1619154_at	CF212140	hypothetical protein LOC100246237	-	1e-7	At4g25770	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
7.6	99.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.5	99.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
5.9	98.6	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
5.3	98.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-101	367	1607968_at	CF605708	hypothetical protein LOC100257164	-	4e-1	At5g21050	-	C.G.	S.X.	Please select
0.02	7e-2	36	1609387_at	CB978426	similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel	-	4e-48	At5g55000	FIP2	C.G.	S.X.	Please select
0.04	1e+0	32	1622483_at	CD719191	-	-	7e+0	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.04	1e+0	32	1618649_at	CD719191	-	-	7e+0	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.04	1e+0	32	1612346_at	CD799709	hypothetical protein LOC100263823	-	8e-1	Atmg00960	-	C.G.	S.X.	Please select
0.02	5e+0	30	1622639_at	CA810871	hypothetical protein LOC100254126	-	1e-4	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.03	5e+0	30	1622337_at	BQ800430	-	-	4e+0	At5g43720	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1622381_s_at	BQ800211	-	-	2e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.03	5e+0	30	1619510_s_at	BQ800430	hypothetical protein LOC100252419	-	4e+0	At5g43720	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At5g21050	832229	-	F:unknown;P:unknown;C:chloroplast;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-13	77	Glycine max	GmaAffx.76724.1.S1_at	BQ629282	-	-	7e+0	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig20479_at	Contig20479	-	-	1e+0	At1g22540	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os12g0478200	AK063578.1	-	GRAM domain containing protein	4e-4	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Populus trichocarpa	Ptp.6096.1.S1_s_at	CK113386	hypothetical protein	-	1e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.87229.1.S1_s_at	CA593558	-	-	7e-12	At3g55010	PUR5	C.G.	S.X.	Please select
0.05	1e-1	36	Zea mays	ZmAffx.1142.1.S1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage