CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614745_at

Gene name hypothetical protein LOC100252143

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1614745_at CA818458 hypothetical protein LOC100252143 - 2e-8 At2g24090 ribosomal protein L35 family protein S.X. H.G.
0.92 99.0 1612337_at CA817376 hypothetical protein LOC100252601 - 1e+0 At4g01897 unknown protein S.X. H.G.
0.83 94.6 1610385_at CF405293 hypothetical protein LOC100253144 - 4e+0 At5g48175 unknown protein S.X. H.G.
0.77 92.3 1607774_at CB342960 hypothetical protein LOC100262553 - 7e+0 At3g14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.71 89.5 1618324_s_at CA816924 hypothetical protein LOC100248700 - 2e-5 At4g34190 SEP1 (STRESS ENHANCED PROTEIN 1) S.X. H.G.
0.63 84.3 1608205_at CA817318 similar to Elongation factor Tu, chloroplastic - 1e-76 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) S.X. H.G.
0.57 79.8 1610649_s_at CB342925 hypothetical protein LOC100263855 - 1e-17 At1g16880 uridylyltransferase-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 96.7 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
3.8 96.4 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
3.6 96.0 GSM147702 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 31
3.6 96.0 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
3.6 96.0 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
3.5 95.7 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
3.4 95.5 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.4 95.5 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
3.4 95.5 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
3.4 95.5 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 34 1616410_at CD720592 - - 2e-15 At3g21250 ATMRP6 C.G. S.X.
0.02 4e-1 34 1612863_at CB913941 - - 3e-30 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
0.03 4e-1 34 1612609_at CD720592 - - 2e-15 At3g21250 ATMRP6 C.G. S.X.
0.02 4e-1 34 1609088_at CF603820 hypothetical protein LOC100254514 - 3e-30 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
0.02 4e-1 34 1608757_at CB349275 hypothetical protein LOC100266172 - 3e-17 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) C.G. S.X.
0.02 2e+0 32 1618227_at CB981519 hypothetical protein LOC100256050 - 4e-20 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related C.G. S.X.
0.02 2e+0 32 1615508_s_at BQ800626 similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III - 2e+0 At2g22426 unknown protein C.G. S.X.
0.02 2e+0 32 1614984_at CF405053 hypothetical protein LOC100250663 - 8e-3 At1g49390 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 2e+0 32 1612472_at BQ800626 similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III - 2e+0 At2g22426 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-8 59 Arabidopsis thaliana At2g24090 816943 ribosomal protein L35 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMF - - - C.G. S.X.
0.18 2e-19 97 Glycine max Gma.5413.3.S1_a_at BU926967 - - 1e-9 At2g24090 ribosomal protein L35 family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig13109_s_at Contig13109 - - 3e+0 At5g18880 - C.G. S.X.
0.10 5e-5 50 Oryza sativa Os06g0647100 AK066837.1 - 50S ribosomal protein L35, chloroplast precursor(CL35) 3e-14 At2g24090 ribosomal protein L35 family protein C.G. S.X.
0.21 3e-36 153 Populus trichocarpa Ptp.6660.1.S1_at CV279014 hypothetical protein - 2e-19 At2g24090 ribosomal protein L35 family protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.17140.1.S1_at CA618136 - - 2e-2 At1g20950 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related C.G. S.X.
0.13 1e-8 59 Zea mays Zm.7636.1.A1_at BM079275 prpl35-1 protein - 8e-12 At2g24090 ribosomal protein L35 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage