CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614608_at

Gene name similar to protein transport protein Sec24, putative

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.80 93.6 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding S.X. H.G.
0.61 83.2 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) S.X. H.G.
0.60 81.9 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein S.X. H.G.
0.55 77.3 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) S.X. H.G.
0.40 57.7 1614557_s_at CF405834 hypothetical protein LOC100243157 - 3e-62 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436395 V. riparia (VR, PI588259) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1615802_at CF518252 - - 4e-1 At4g35200 unknown protein C.G. S.X.
0.02 2e+0 32 1622869_s_at CF514855 hypothetical protein LOC100263432 - 3e-117 At3g14290 PAE2 C.G. S.X.
0.01 2e+0 32 1614840_at CF415070 hypothetical protein LOC100248036 - 2e-56 At1g10840 TIF3H1 C.G. S.X.
0.02 7e+0 30 1622212_at BQ798158 hypothetical protein LOC100250769 - 3e-54 At2g46280 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) C.G. S.X.
0.02 7e+0 30 1621991_at CB978460 hypothetical protein LOC100243393 - 1e-1 At2g41060 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 7e+0 30 1620554_at CB001631 - - 2e+0 At4g28020 unknown protein C.G. S.X.
0.03 7e+0 30 1620556_at CF208984 hypothetical protein LOC100261914 - 4e+0 At5g63150 unknown protein C.G. S.X.
0.02 7e+0 30 1620429_at AY427141.1 - - 1e-9 At5g63710 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 7e+0 30 1620117_at CF207149 - - 4e+0 At5g09270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-10 65 Arabidopsis thaliana At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA - - - C.G. S.X.
0.17 6e-16 85 Glycine max Gma.1659.2.S1_a_at AW704429 - - 7e-3 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEn0019N20f2_at HVSMEn0019N20f2 - - 5e-1 At3g45443 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.8801.1.S1_at - - - 0 C.G. S.X.
0.23 5e-29 129 Populus trichocarpa PtpAffx.149013.1.A1_at CK095544 hypothetical protein - 2e-5 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.13284.1.S1_at BG910123 - - 1e-1 At2g01080 - C.G. S.X.
0.06 6e-1 34 Zea mays ZmAffx.58.1.A1_at AI665082 - - 3e+0 At4g04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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