Gene omics information

Query gene ID	1614479_at
Gene name	arginine decarboxylase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.7	1614479_at	BQ796528	arginine decarboxylase	-	6e-21	At2g16500	ADC1 (ARGININE DECARBOXYLASE 1)	S.X.	H.G.	Please select
0.61	83.2	1616399_s_at	CD800967	arginine decarboxylase	-	3e-1	At2g33310	IAA13	S.X.	H.G.	Please select
0.46	66.5	1608622_at	CA809509	hypothetical protein LOC100268116	-	2e-1	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.45	64.6	1612283_at	CD801529	hypothetical protein LOC100256599	-	4e-8	At4g18740	transcription termination factor	S.X.	H.G.	Please select
0.41	58.7	1621180_a_at	CB971762	hypothetical protein LOC100261175	-	7e-5	At3g28460	unknown protein	S.X.	H.G.	Please select
0.37	51.7	1608548_s_at	CF207041.1	hypothetical protein LOC100243384	-	3e+0	At5g43211	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1608848_at	CD715853	-	-	1e+1	At5g36910	THI2.2 (THIONIN 2.2)	S.X.	H.G.	Please select
0.31	41.3	1612727_at	CF514617	similar to MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase	-	3e-13	At4g37040	MAP1D (METHIONINE AMINOPEPTIDASE 1D)	S.X.	H.G.	Please select
0.30	39.4	1615220_at	CB340728	hypothetical protein LOC100262100	-	2e-10	At1g27510	-	S.X.	H.G.	Please select
0.29	37.7	1622089_at	BQ800092	hypothetical protein LOC100245345	-	1e-5	At1g28140	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.8	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
8.2	99.4	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
6.3	98.8	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
6.0	98.7	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
5.9	98.6	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
5.3	98.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
5.3	98.2	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
4.9	97.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-94	345	1616399_s_at	CD800967	arginine decarboxylase	-	3e-1	At2g33310	IAA13	C.G.	S.X.	Please select
0.12	3e-94	345	1610320_at	CD800967	hypothetical protein LOC100248020	-	3e-1	At2g33310	IAA13	C.G.	S.X.	Please select
0.01	3e-1	36	1611410_at	CF414577	hypothetical protein LOC100241721	-	5e-15	At3g62100	IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)	C.G.	S.X.	Please select
0.01	1e+0	34	1622562_at	CD006619	-	-	7e-40	At1g79510	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1617236_at	CD006619	hypothetical protein LOC100243255	-	7e-40	At1g79510	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.01	1e+0	34	1613017_s_at	CD003887	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	C.G.	S.X.	Please select
0.01	1e+0	34	1609268_at	CF414192	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	C.G.	S.X.	Please select
0.01	5e+0	32	1621503_at	CD717704	-	-	3e-1	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-21	103	Arabidopsis thaliana	At2g16500	816149	ADC1 (ARGININE DECARBOXYLASE 1)	encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-38	161	Glycine max	GmaAffx.92976.1.S1_s_at	CF808701	arginine decarboxylase	-	3e-11	At2g16500	ADC1 (ARGININE DECARBOXYLASE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Hordeum vulgare	HA12A02u_at	HA12A02u	-	-	1e+0	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select
0.02	4e-2	42	Oryza sativa	Os04g0107600	AK058573.1	-	Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)	1e+0	At5g08139	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	3e-82	307	Populus trichocarpa	PtpAffx.204255.1.S1_at	pmrna8374	hypothetical protein	-	8e-30	At2g16500	ADC1 (ARGININE DECARBOXYLASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	5e+0	34	Triticum aestivum	TaAffx.87042.1.S1_at	CA596889	-	-	2e+0	At3g27950	early nodule-specific protein, putative	C.G.	S.X.	Please select
0.02	5e-1	36	Zea mays	Zm.12127.1.A1_at	CO519754	-	-	4e+0	At1g62333	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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