Gene omics information

Query gene ID	1614462_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1614462_at	CB343121	-	-	4e-63	Atcg00300	-	S.X.	H.G.	Please select
0.80	93.6	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	S.X.	H.G.	Please select
0.80	93.6	1612357_s_at	CF203581.1	-	-	4e+0	At5g66240	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	87.9	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.60	81.9	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.29	37.7	1618379_s_at	CB343512	-	-	1e+0	At3g49115	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	99.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
6.4	98.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
6.3	98.8	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
6.2	98.8	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
6.2	98.8	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
5.9	98.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
5.7	98.5	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
5.6	98.4	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
5.4	98.3	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
5.3	98.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-40	165	1613780_x_at	CF202064.1	-	-	1e+0	At3g50970	LTI30 (LOW TEMPERATURE-INDUCED 30)	C.G.	S.X.	Please select
0.17	2e-40	165	1610152_at	CF202064.1	-	-	1e+0	At3g50970	LTI30 (LOW TEMPERATURE-INDUCED 30)	C.G.	S.X.	Please select
0.14	1e-29	129	1610994_x_at	CF203231.1	-	-	1e+0	At1g48530	-	C.G.	S.X.	Please select
0.04	2e-3	42	1612048_at	CD798427	-	-	0	Atcg00380	-	C.G.	S.X.	Please select
0.03	2e-3	42	1611270_s_at	CF213958	-	-	1e-52	Atcg00070	-	C.G.	S.X.	Please select
0.06	2e-3	42	1610459_s_at	CF513650	-	-	4e-9	Atcg00080	-	C.G.	S.X.	Please select
0.02	4e-2	38	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.02	4e-2	38	1614914_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.02	1e-1	36	1616872_at	CB341651	hypothetical protein LOC100253885	-	3e-12	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	4e-63	242	Arabidopsis thaliana	Atcg00300	-	-	encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has been shown to be essential in the interaction between PS II and the light harvesting complex II.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	1e-73	278	Glycine max	GmaAffx.2651.1.S1_at	CA937355	-	-	2e-49	Atcg00300	-	C.G.	S.X.	Please select
0.15	3e-31	135	Hordeum vulgare	HVSMEb0007O01f_at	HVSMEb0007O01f	-	-	1e-12	Atcg00280	-	C.G.	S.X.	Please select
0.28	2e-48	194	Oryza sativa	OsAffx.32189.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	3e-89	329	Populus trichocarpa	PtpAffx.162388.1.S1_at	CX186725	-	-	2e-48	Atcg00300	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-22	107	Triticum aestivum	TaAffx.128712.1.S1_at	BJ275210	-	-	1e-14	Atcg00300	-	C.G.	S.X.	Please select
0.28	9e-47	186	Zea mays	ZmAffx.1445.1.S1_at	11990232-8	-	-	1e-34	Atcg00300	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage