Gene omics information

Query gene ID	1614445_at
Gene name	hypothetical protein LOC100250076
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1614445_at	BQ796553	hypothetical protein LOC100250076	-	3e-36	At1g63970	ISPF	S.X.	H.G.	Please select
0.83	94.6	1620973_s_at	BQ798594	hypothetical protein LOC100265749	-	4e+0	At3g22415	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1620681_at	CB001091	hypothetical protein LOC100244005	-	1e-9	At5g11330	monooxygenase family protein	S.X.	H.G.	Please select
0.57	79.8	1619183_at	CA814661	hypothetical protein LOC100251027	-	4e-21	At4g27600	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.50	72.7	1619317_at	CF516706	hypothetical protein LOC100250509	-	4e-125	At5g42270	VAR1 (VARIEGATED 1)	S.X.	H.G.	Please select
0.40	57.7	1607125_at	CB342111	hypothetical protein LOC100242557	-	8e-2	At5g26820	ATIREG3 (IRON-REGULATED PROTEIN 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
3.7	96.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.7	96.2	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
3.6	96.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
3.5	95.7	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
3.3	95.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
3.2	94.9	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
3.0	94.2	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
3.0	94.2	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.9	93.8	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1621896_at	CF604980	hypothetical protein LOC100265858	-	1e-9	At3g05100	-	C.G.	S.X.	Please select
0.02	5e-1	34	1621905_at	CF414354	-	-	4e-1	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	C.G.	S.X.	Please select
0.01	5e-1	34	1619072_at	CF605045	-	-	1e-42	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select
0.02	5e-1	34	1618725_at	CD797755	hypothetical protein LOC100265933	-	7e-4	At5g54540	-	C.G.	S.X.	Please select
0.02	5e-1	34	1608948_at	BQ800550	hypothetical protein LOC100245327	-	4e+0	At3g56210	binding	C.G.	S.X.	Please select
0.02	2e+0	32	1618085_at	CF372334	similar to Heat shock 70 kDa protein, mitochondrial	-	4e-23	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1618024_at	CF568871	-	-	2e-14	At1g23800	ALDH2B7	C.G.	S.X.	Please select
0.02	2e+0	32	1615452_at	CB345337	hypothetical protein LOC100255210	-	1e-25	At3g55200	splicing factor, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1613740_at	BM436747	hypothetical protein LOC100248677	-	4e-63	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-36	153	Arabidopsis thaliana	At1g63970	842700	ISPF	Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	3e-61	236	Glycine max	Gma.6859.1.S1_s_at	AW309700	-	-	5e-13	At1g63970	ISPF	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	baak1p18_s_at	baak1p18	-	-	7e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.05	2e-1	38	Oryza sativa	Os02g0680600	AK060238.1	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase, chloroplast precursor (EC 4.6.1.12) (MECPS)(MECDP-synthase)	9e-3	At1g63970	ISPF	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	5e-57	222	Populus trichocarpa	PtpAffx.33751.1.S1_at	CV249676	hypothetical protein	-	7e-65	At1g63970	ISPF	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-2	40	Triticum aestivum	TaAffx.86065.1.S1_at	CA617026	-	-	1e-6	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	C.G.	S.X.	Please select
0.31	1e-8	59	Zea mays	ZmAffx.548.1.S1_at	AI712133	-	-	9e-13	At1g63970	ISPF	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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