Gene omics information

Query gene ID	1614194_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1614194_at	CA808916	-	-	8e-18	At3g18790	-	S.X.	H.G.	Please select
0.15	15.6	AFFX-r2-P1-cre-5_at	AFFX-r2-P1-cre-5	-	-	0			S.X.	H.G.	Please select
0.15	15.6	AFFX-Vvi-X03453-2_s_at	-	-	-	0			S.X.	H.G.	Please select
0.08	8.5	1618769_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.07	7.8	1615073_at	CD798908	GAGA-binding transcriptional activator BBR/BPC6-like	-	1e-40	At5g42520	ATBPC6	S.X.	H.G.	Please select
0.05	6.0	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.0	96.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1336	1610396_at	CA808916	-	-	8e-18	At3g18790	-	C.G.	S.X.	Please select
0.03	1e-1	36	1608172_at	CD799315	-	-	1e-2	At2g18050	HIS1-3 (HISTONE H1-3)	C.G.	S.X.	Please select
0.02	5e-1	34	1618460_at	CD007558	-	-	5e+0	At5g26114	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.01	5e-1	34	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	5e-1	34	1614678_at	CD007558	-	-	5e+0	At5g26114	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	1614414_at	CF604774	hypothetical protein LOC100242355	-	2e-2	At1g07900	LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e-1	34	1608665_at	CF211188	-	-	1e+0	At1g43790	TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6)	C.G.	S.X.	Please select
0.02	2e+0	32	1622419_at	CB343655	GAGA-binding transcriptional activator BBR/BPC1-like	-	5e-20	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-18	91	Arabidopsis thaliana	At3g18790	821412	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	3e-18	93	Glycine max	GmaAffx.55466.1.S1_at	BM271288	-	-	1e-15	At3g18790	-	C.G.	S.X.	Please select
0.08	5e-5	48	Hordeum vulgare	Contig17681_at	Contig17681	-	-	1e-3	At3g18790	-	C.G.	S.X.	Please select
0.05	9e-10	65	Oryza sativa	Os02g0602500	AK064340.1	-	Isy1-like splicing family protein	5e-8	At3g18790	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-10	67	Populus trichocarpa	PtpAffx.53822.1.S1_at	CV270700	-	-	3e-12	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-9	61	Triticum aestivum	Ta.25969.1.S1_at	CD454010	-	-	4e-8	At3g18790	-	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.5985.2.A1_at	AY104529.1	hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage