CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1614138_at

Gene name hypothetical protein LOC100254839

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.80 93.6 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.80 93.6 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.80 93.6 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative S.X. H.G.
0.71 89.5 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein S.X. H.G.
0.67 87.9 1610155_at CF210468 hypothetical protein LOC100263834 - 2e-25 At1g16080 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 98.4 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
5.2 98.2 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
5.0 98.0 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.7 97.7 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
4.7 97.7 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
4.7 97.7 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
4.6 97.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
4.4 97.3 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
4.3 97.2 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.3 97.2 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-4 44 1609138_at CF519079 hypothetical protein LOC100241044 - 2e+0 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.03 4e-1 34 1618431_at CA817390 hypothetical protein LOC100253034 - 3e-1 At5g13620 unknown protein C.G. S.X.
0.01 4e-1 34 1609074_at CF404778 hypothetical protein LOC100261057 - 6e-2 At5g52510 scarecrow-like transcription factor 8 (SCL8) C.G. S.X.
0.03 4e-1 34 1606704_s_at CF200937.1 - - 2e-103 Atcg00580 - C.G. S.X.
0.01 2e+0 32 1621190_at CB341294 - - 0 Atcg01280 - C.G. S.X.
0.02 2e+0 32 1620719_at CD011034 - - 3e-1 At4g19840 ATPP2-A1 C.G. S.X.
0.01 2e+0 32 1619623_a_at CB976175 hypothetical protein LOC100241281 - 6e-2 At3g56580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e+0 32 1618950_at CD718527 - - 9e-2 At2g01350 QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) C.G. S.X.
0.02 2e+0 32 1618155_at CD004374 hypothetical protein LOC100242982 - 1e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-14 79 Arabidopsis thaliana At1g68590 843189 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative F:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBP - - - C.G. S.X.
0.33 4e-60 232 Glycine max Gma.10730.1.S1_at CD404447 - - 1e-16 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.05 8e-7 54 Hordeum vulgare HV05C10u_at HV05C10u - - 3e+0 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.04 1e-8 61 Oryza sativa Os04g0461100 AK068022.1 - Plastid and cyanobacterial ribosomal proteinPSRP-3/Ycf65 family protein 8e-12 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.24 2e-25 117 Populus trichocarpa PtpAffx.249.218.S1_at CV230208 hypothetical protein - 7e-31 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.17328.1.S1_at CA619663 - - 2e+0 At4g35987 unknown protein C.G. S.X.
0.03 6e-4 44 Zea mays Zm.9179.1.S1_at CD998283 hypothetical protein LOC100193993 - 3e-8 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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