Gene omics information

Query gene ID	1613997_at
Gene name	hypothetical protein LOC100246545
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	1613997_at	CB970314	hypothetical protein LOC100246545	-	3e-13	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	S.X.	H.G.	Please select
0.56	79.4	1615791_s_at	CA809329	hypothetical protein LOC100260183	-	2e-37	At2g45990	unknown protein	S.X.	H.G.	Please select
0.49	69.3	1615874_at	CF403960	hypothetical protein LOC100244966	-	2e-127	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	S.X.	H.G.	Please select
0.47	67.7	1615149_at	CD009120	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	S.X.	H.G.	Please select
0.47	67.7	1617180_s_at	CA814162	hypothetical protein LOC100247137	-	2e-33	At3g56240	CCH (COPPER CHAPERONE)	S.X.	H.G.	Please select
0.47	67.7	1606993_at	CB970398	-	-	4e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.45	64.6	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select
0.43	61.5	1611605_s_at	CF371905	hypothetical protein LOC100257686	-	2e-3	At2g31050	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.43	61.5	1607276_at	CF202469.1	-	-	1e-13	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.41	58.7	1606809_at	CF207836	hypothetical protein LOC100250094	-	7e-5	At5g60750	CAAX amino terminal protease family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	98.1	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11
4.5	97.5	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
4.4	97.3	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
4.1	96.9	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
3.8	96.4	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
3.7	96.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.3	95.2	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
3.3	95.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
3.2	94.9	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	38	1616662_at	CF404703	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	C.G.	S.X.	Please select
0.04	8e-2	36	1618217_at	BQ800451	hypothetical protein LOC100266917	-	1e+0	At1g48300	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	36	1612891_at	CB969442	hypothetical protein LOC100260359	-	9e-15	At3g12680	HUA1 (ENHANCER OF AG-4 1)	C.G.	S.X.	Please select
0.02	3e-1	34	1609118_at	CF211603	hypothetical protein LOC100248915	-	3e-2	At1g44170	ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1)	C.G.	S.X.	Please select
0.02	3e-1	34	1608352_at	CB978000	similar to TGA-type basic leucine zipper protein TGA2.1	-	1e-19	At5g06960	OBF5 (OCS-ELEMENT BINDING FACTOR 5)	C.G.	S.X.	Please select
0.01	1e+0	32	1621314_s_at	CB347113	hypothetical protein LOC100253630 /// hypothetical protein LOC100261438	-	2e-10	At4g39780	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	1e+0	32	1620853_at	CB347113	-	-	2e-10	At4g39780	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1616425_at	CF208709	hypothetical protein LOC100260616	-	5e-7	At2g32730	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1614526_at	CD711134	-	-	4e-20	At4g23850	long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-13	75	Arabidopsis thaliana	At3g57330	824900	ACA11 (autoinhibited Ca2+-ATPase 11)	F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-20	99	Glycine max	Gma.6344.1.S1_s_at	BU765544	-	-	5e-63	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.09	6e-13	73	Hordeum vulgare	Contig14075_at	Contig14075	-	-	6e-33	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.08	6e-13	75	Oryza sativa	Os11g0140400	9640.m00336	-	Calcium-translocating P-type ATPase, PMCA-typefamily protein	2e-24	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	5e-19	95	Populus trichocarpa	PtpAffx.218924.1.S1_at	pmrna34683	autoinhibited calcium ATPase	-	1e-28	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-10	65	Triticum aestivum	Ta.10263.1.S1_at	CA703693	-	-	1e-35	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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