Gene omics information

Query gene ID	1613989_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1613989_at	CF414043	-	-	7e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.25	30.5	1612639_at	BQ792734	hypothetical protein LOC100261631	-	1e-6	At2g39910	binding	S.X.	H.G.	Please select
0.17	18.2	1613521_at	CF514518	metallothionein	-	5e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	S.X.	H.G.	Please select
0.15	15.6	1611160_at	CF415355	-	-	4e+0	At1g48330	unknown protein	S.X.	H.G.	Please select
0.01	2.1	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.01	2.1	1618063_at	CB980274	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.3	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.8	96.4	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.7	96.2	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
3.5	95.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-8	56	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.08	6e-8	56	1614914_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.08	2e-5	48	1613712_at	CF403703	hypothetical protein LOC100248230	-	3e-9	At2g37478	CPuORF52 (Conserved peptide upstream open reading frame 52)	C.G.	S.X.	Please select
0.02	2e-1	34	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.03	2e-1	34	1619476_at	CB836997	-	-	6e+0	At5g43185	Expressed protein	C.G.	S.X.	Please select
0.04	2e-1	34	1611054_at	CF516017	-	-	4e+0	Atmg01290	-	C.G.	S.X.	Please select
0.03	2e-1	34	1606821_at	CB836997	-	-	6e+0	At5g43185	Expressed protein	C.G.	S.X.	Please select
0.02	9e-1	32	1619072_at	CF605045	-	-	1e-42	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select
0.02	9e-1	32	1617822_at	CB976807	-	-	1e-42	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-1	34	Arabidopsis thaliana	At4g11600	826765	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	Encodes glutathione peroxidase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-3	44	Glycine max	Gma.4312.1.S1_a_at	BM523337	-	-	9e-12	At2g31570	ATGPX2 (GLUTATHIONE PEROXIDASE 2)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig2454_at	Contig2454	phospholipid hydroperoxide glutathione peroxidase-like protein	-	5e-72	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	Os02g0653700	9630.m04207	-	-	6e-2	At2g03350	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.29368.1.A1_at	BP930713	-	-	3e-2	At4g15520	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.121758.1.S1_at	BF482518	-	-	4e-7	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	ZmAffx.362.1.A1_at	AI670617	-	-	8e-1	At1g56345	pseudouridine synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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