CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613965_at

Gene name hypothetical protein LOC100267561

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613965_at CF210779 hypothetical protein LOC100267561 - 1e-18 At3g04740 SWP (STRUWWELPETER) S.X. H.G.
0.71 89.5 1609016_at CD802400 - - 8e-1 At1g23570 unknown protein S.X. H.G.
0.71 89.5 1621697_at CF207483 hypothetical protein LOC100247318 - 1e+0 At5g57440 GS1 S.X. H.G.
0.67 87.9 1611479_at CD799903 heterogeneous nuclear ribonucleoprotein-like - 2e-1 At3g27200 plastocyanin-like domain-containing protein S.X. H.G.
0.40 57.7 1607033_at CD799937 hypothetical protein LOC100259729 - 4e-1 At3g30247 - S.X. H.G.
0.31 41.3 1609196_at BQ792412 hypothetical protein LOC100256073 - 3e-1 At3g14020 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
9.6 99.6 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
8.6 99.5 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
8.2 99.4 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
7.8 99.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
7.8 99.3 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
7.5 99.2 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
7.1 99.1 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
6.9 99.1 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
6.6 98.9 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 36 1621221_at CF403377 hypothetical protein LOC100252472 - 7e-28 At5g11900 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
0.03 3e-1 34 1620816_at BQ800154 hypothetical protein LOC100264994 - 1e-3 At2g44670 senescence-associated protein-related C.G. S.X.
0.02 3e-1 34 1616932_at BQ797202 hypothetical protein LOC100254373 - 1e-8 At1g71110 unknown protein C.G. S.X.
0.02 1e+0 32 1621982_s_at BQ794582 hypothetical protein LOC100265955 - 1e-14 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.01 1e+0 32 1615352_s_at CB972821 hypothetical protein LOC100248779 - 5e-138 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.03 1e+0 32 1612241_at CF202625.1 - - 3e-85 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.03 1e+0 32 1612126_at CF201785.1 - - 4e-1 At3g15810 unknown protein C.G. S.X.
0.03 1e+0 32 1611869_at CF609640 hypothetical protein LOC100254356 - 5e-9 At2g24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein C.G. S.X.
0.03 1e+0 32 1609216_at CF202485.1 - - 8e-2 At1g01490 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-18 93 Arabidopsis thaliana At3g04740 819634 SWP (STRUWWELPETER) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. - - - C.G. S.X.
0.04 1e+0 34 Glycine max HgAffx.16703.1.S1_at CB279653 - - 4e+0 At4g08875 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig17142_at Contig17142 - - 1e-3 At2g19450 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) C.G. S.X.
0.04 8e-3 42 Oryza sativa Os02g0639800 AK071904.1 - Zn-finger, RING domain containing protein 1e-5 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.08 1e-50 200 Populus trichocarpa PtpAffx.210996.1.S1_at pmrna21599 hypothetical protein - 1e-67 At3g04740 SWP (STRUWWELPETER) C.G. S.X.
0.04 2e+1 30 Triticum aestivum TaAffx.58818.1.S1_at CA615111 - - 1e+0 At5g54531 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.4825.1.A1_at AI978181 hypothetical protein LOC100272679 - 1e-1 At1g42480 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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