Gene omics information

Query gene ID	1613947_at
Gene name	hypothetical protein LOC100253773
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1613947_at	CF605643	hypothetical protein LOC100253773	-	8e-3	At3g03520	phosphoesterase family protein	S.X.	H.G.	Please select
0.53	75.2	1616822_at	AF220196.1	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	S.X.	H.G.	Please select
0.50	72.7	1607449_s_at	AY046416.1	proline-rich protein 1 /// proline rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.44	64.1	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	S.X.	H.G.	Please select
0.38	53.6	1609762_s_at	CD712929	hypothetical protein LOC100257013	-	4e-19	At1g16270	protein kinase family protein	S.X.	H.G.	Please select
0.38	53.6	1617361_at	CF404356	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	S.X.	H.G.	Please select
0.29	37.7	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	S.X.	H.G.	Please select
0.27	34.0	1611013_at	CF518927	hypothetical protein LOC100243798	-	4e-1	At5g22890	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.27	34.0	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	S.X.	H.G.	Please select
0.26	32.0	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.3	99.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.1	99.8	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.9	99.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.1	99.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.8	99.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.5	99.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.3	99.4	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0	99.1	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2	98.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.02	6e-1	34	1618890_at	CF213499	hypothetical protein LOC100259524	-	2e-1	At1g54080	oligouridylate-binding protein, putative	C.G.	S.X.	Please select
0.02	6e-1	34	1616825_at	CF214279	hypothetical protein LOC100250203	-	2e-41	At1g07230	hydrolase, acting on ester bonds	C.G.	S.X.	Please select
0.01	6e-1	34	1610238_s_at	CF404536	hypothetical protein LOC100250511	-	0	At1g06430	FTSH8	C.G.	S.X.	Please select
0.01	6e-1	34	1609540_at	CF404536	-	-	0	At1g06430	FTSH8	C.G.	S.X.	Please select
0.01	2e+0	32	1621811_at	CB341999	SINA2p	-	5e-48	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1621168_at	CF208311	-	-	4e+0	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.02	2e+0	32	1618265_at	CF403167	hypothetical protein LOC100244806	-	8e-86	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.02	2e+0	32	1617882_at	CB346978	hypothetical protein LOC100265703	-	1e-19	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	8e-3	42	Arabidopsis thaliana	At3g03520	821244	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:biological_process unknown;C:vacuole, membrane;BFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	6e-17	89	Glycine max	GmaAffx.8621.1.S1_at	BF325451	-	-	2e-5	At3g03520	phosphoesterase family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig7171_s_at	Contig7171	-	-	1e-1	At2g30115	-	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.7365.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	3e-18	93	Populus trichocarpa	PtpAffx.211137.1.S1_at	pmrna21879	hypothetical protein	-	5e-8	At3g03540	NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.105881.1.S1_at	CA593194	-	-	4e-4	At3g03530	NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)	C.G.	S.X.	Please select
0.07	1e-2	40	Zea mays	ZmAffx.1199.2.S1_at	AI691435	hydrolase, acting on ester bonds	-	5e-5	At1g07230	hydrolase, acting on ester bonds	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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