CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613922_s_at

Gene name hypothetical protein LOC100249812

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613922_s_at CA809290 hypothetical protein LOC100249812 - 1e+0 At3g22970 unknown protein S.X. H.G.
0.77 92.3 1608159_at CB969766 hypothetical protein LOC100242214 - 8e-14 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.67 87.9 1614972_at CB969853 hypothetical protein LOC100242214 - 7e-5 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.55 77.3 1607880_at BQ793902 hypothetical protein LOC100263570 - 4e-2 At2g02800 APK2B (PROTEIN KINASE 2B) S.X. H.G.
0.47 67.7 1617293_s_at BQ792635 hypothetical protein LOC100254983 - 1e+0 At2g40530 unknown protein S.X. H.G.
0.26 32.0 1616224_at CB978316 - - 1e+1 At5g06450 nucleic acid binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.5 100.0 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
31.7 100.0 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
30.4 100.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
27.1 100.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
16.8 99.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
12.1 99.8 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
5.9 98.6 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.5 97.5 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.8 96.4 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
3.5 95.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 34 1622372_s_at CA818126 hypothetical protein LOC100261242 - 1e+0 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.02 4e-1 34 1619871_at CD003937 - - 2e+0 At5g46940 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 4e-1 34 1618517_at CB971627 hypothetical protein LOC100259328 - 2e+0 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 4e-1 34 1617696_at CB974576 - - 8e-1 At5g54970 unknown protein C.G. S.X.
0.02 4e-1 34 1616101_at CD003937 - - 2e+0 At5g46940 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 4e-1 34 1608737_at CF518229 similar to KAK (KAKTUS) - 6e-32 At4g38600 KAK (KAKTUS) C.G. S.X.
0.03 2e+0 32 1622778_at BQ797582 WRKY-type DNA binding protein 1 - 5e-22 At5g13080 WRKY75 C.G. S.X.
0.02 2e+0 32 1622429_at CF204998.1 hypothetical protein LOC100250803 - 1e-4 At5g40250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 32 1620815_at CF568885 - - 1e-15 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At3g22970 821871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.69146.1.S1_at BE020450 - - 2e-2 At2g26000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig10151_s_at Contig10151 - - 2e+0 At5g28750 thylakoid assembly protein, putative C.G. S.X.
0.03 3e+0 34 Oryza sativa Os08g0395300 AU223384 - Clathrin adaptor complex, small chain familyprotein 1e-35 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.140138.1.A1_s_at CV246092 anion exchanger family protein - 5e-3 At2g47160 BOR1 (REQUIRES HIGH BORON 1) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.81108.1.S1_at CA689415 - - 1e+0 At3g24510 - C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1314.1.S1_s_at 40794996-142 - - 4e+0 Atcg01120 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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