Gene omics information

Query gene ID	1613916_at
Gene name	hypothetical protein LOC100250922
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1613916_at	CF404702	hypothetical protein LOC100250922	-	1e-24	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	S.X.	H.G.	Please select
0.53	75.2	1607656_at	CF514698	hypothetical protein LOC100252782	-	2e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	S.X.	H.G.	Please select
0.48	68.8	1606798_at	CF209842	glutamine synthetase	-	5e-42	At3g17820	ATGSKB6	S.X.	H.G.	Please select
0.32	43.1	1621674_at	CF515644	hypothetical protein LOC100246584	-	2e-27	At3g56950	SIP2	S.X.	H.G.	Please select
0.31	41.3	1610660_at	CB008720	hypothetical LOC100263492	-	1e+0	At2g20700	unknown protein	S.X.	H.G.	Please select
0.24	28.7	1619688_x_at	CF204108.1	-	-	9e-1	At4g35280	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.23	27.5	1614326_s_at	CF518670	hypothetical protein LOC100255146	-	1e+0	At4g04630	unknown protein	S.X.	H.G.	Please select
0.23	27.5	1617782_at	BQ799406	-	-	3e-1	At1g66560	WRKY64	S.X.	H.G.	Please select
0.17	18.2	1619854_at	BQ796294	-	-	7e-16	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.6	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
6.9	99.1	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
6.9	99.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
6.4	98.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
6.1	98.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
6.1	98.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.6	98.4	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
5.3	98.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
5.3	98.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
5.2	98.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	1610527_at	CA815926	hypothetical protein LOC100260552	-	4e-3	At3g18830	ATPLT5 (POLYOL TRANSPORTER 5)	C.G.	S.X.	Please select
0.02	9e-1	34	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.01	9e-1	34	1610800_at	CF204250.1	-	-	2e+0	At2g35370	GDCH	C.G.	S.X.	Please select
0.02	4e+0	32	1622104_at	BQ799828	hypothetical protein LOC100248622	-	3e-4	At5g42500	disease resistance-responsive family protein	C.G.	S.X.	Please select
0.01	4e+0	32	1619431_at	CD715997	-	-	3e-1	At1g59535	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	1619335_at	CB005450	-	-	2e+0	At4g09775	-	C.G.	S.X.	Please select
0.01	4e+0	32	1617872_s_at	CF404326	hypothetical protein LOC100257528	-	1e-66	At3g04600	tRNA synthetase class I (W and Y) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	1618014_at	CD801927	-	-	2e-1	At5g50440	MEMB12 (MEMBRIN 12)	C.G.	S.X.	Please select
0.01	4e+0	32	1615618_at	CD715997	-	-	3e-1	At1g59535	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-24	115	Arabidopsis thaliana	At5g64410	836562	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	oligopeptide transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	3e-59	230	Glycine max	GmaAffx.64151.1.S1_at	BM887517	-	-	2e-32	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	Contig22907_at	Contig22907	-	-	4e+0	At3g08910	DNAJ heat shock protein, putative	C.G.	S.X.	Please select
0.05	1e-13	79	Oryza sativa	Os04g0594800	AK070801.1	-	Oligopeptide transporter OPT superfamily protein	3e-4	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.61	0	732	Populus trichocarpa	Ptp.8110.1.S1_at	CV227916	oligopeptide transporter OPT family	-	2e-62	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	5e-5	50	Triticum aestivum	Ta.8599.1.A1_at	BQ162109	-	-	2e-11	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.13843.1.A1_at	AY104026.1	hypothetical protein LOC100194177	-	6e-3	At3g59660	C2 domain-containing protein / GRAM domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage