CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613905_at

Gene name hypothetical protein LOC100254141

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613905_at CF210463 hypothetical protein LOC100254141 - 3e-13 At5g08160 ATPK3 S.X. H.G.
0.60 81.9 1613731_at CF513972 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) S.X. H.G.
0.50 72.7 1615024_at CB911127 hypothetical protein LOC100261826 - 2e-27 At2g05840 PAA2 (20S PROTEASOME SUBUNIT PAA2) S.X. H.G.
0.36 50.7 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.33 45.7 1612122_at BQ800294 hypothetical protein LOC100246317 /// hypothetical protein LOC100254873 - 1e-17 At3g13870 RHD3 (ROOT HAIR DEFECTIVE 3) S.X. H.G.
0.15 15.6 1622693_at CB976483 hypothetical protein LOC100246014 - 3e-10 At4g12650 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
1.9 87.2 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
1.9 87.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 1621654_at CB979616 hypothetical protein LOC100256116 - 3e-4 At2g26830 emb1187 (embryo defective 1187) C.G. S.X.
0.03 1e+0 32 1618915_at BQ796588 hypothetical protein LOC100244247 - 4e+0 At5g26670 pectinacetylesterase, putative C.G. S.X.
0.03 1e+0 32 1616376_at CB979053 hypothetical protein LOC100243811 - 8e-1 At4g09110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e+0 32 1614965_at BQ792730 MADS-box protein 4 - 6e-36 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.01 1e+0 32 1614266_at BQ792322 - - 1e-76 Atcg01040 - C.G. S.X.
0.03 1e+0 32 1612699_at BQ798614 hypothetical protein LOC100249729 - 1e+0 At4g23340 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 1e+0 32 1608849_at CF405875 - - 1e+0 At1g01910 anion-transporting ATPase, putative C.G. S.X.
0.03 5e+0 30 1621692_at BM437998 - - 2e-2 At3g16900 unknown protein C.G. S.X.
0.02 5e+0 30 1619455_at CD004662 - - 5e+0 At5g08370 AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-13 75 Arabidopsis thaliana At5g08160 830712 ATPK3 Encodes a serine/threonine protein kinase. - - - C.G. S.X.
0.22 2e-34 147 Glycine max GmaAffx.78222.1.A1_at BU551229 - - 2e-36 At5g08160 ATPK3 C.G. S.X.
0.06 6e-10 63 Hordeum vulgare Contig11060_at Contig11060 - - 4e-30 At5g08160 ATPK3 C.G. S.X.
0.04 4e-5 50 Oryza sativa Os09g0372800 AK112000.1 - Protein kinase domain containing protein 3e-9 At5g08160 ATPK3 C.G. S.X.
0.20 1e-65 250 Populus trichocarpa PtpAffx.4971.2.S1_a_at CV252275 hypothetical protein - 3e-49 At5g08160 ATPK3 C.G. S.X.
0.06 1e-3 44 Triticum aestivum TaAffx.58682.1.S1_at CA617331 - - 2e-1 At2g19530 unknown protein C.G. S.X.
0.06 4e-11 67 Zea mays Zm.16324.1.A1_at CF032268 hypothetical protein LOC100194392 - 5e-17 At5g08160 ATPK3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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