CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613839_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 92.7 1613839_at CB001705 - - 2e-14 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) S.X. H.G.
0.53 75.2 1608135_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) S.X. H.G.
0.50 72.7 1614538_at AY427198.1 - - 2e-1 At3g46760 protein kinase family protein S.X. H.G.
0.46 66.5 1620333_at CF608264 - - 1e-10 At3g08020 protein binding / zinc ion binding S.X. H.G.
0.45 64.6 1607040_at CF568797 - - 5e-24 At1g54610 protein kinase family protein S.X. H.G.
0.45 64.6 1614154_at CF568802 - - 7e-8 At1g72440 EDA25 (embryo sac development arrest 25) S.X. H.G.
0.42 60.1 1615204_at CF371804 - - 1e+0 At3g21580 cobalt ion transmembrane transporter S.X. H.G.
0.40 57.7 1617917_at CF405637 - - 4e+0 At1g53100 acetylglucosaminyltransferase S.X. H.G.
0.38 53.6 1618712_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.32 43.1 1622036_at CB983151 - - 6e+0 At2g45190 AFO (ABNORMAL FLORAL ORGANS) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 98.4 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.5 98.4 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
5.4 98.3 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.6 96.0 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
3.4 95.5 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.0 94.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1320 1610046_at CB001705 hypothetical protein LOC100263361 - 2e-14 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
0.05 7e-9 59 1617360_at BQ796794 hypothetical protein LOC100266898 - 7e-6 At5g15700 DNA-directed RNA polymerase (RPOT2) C.G. S.X.
0.02 4e-1 34 1612223_s_at CF518767 - - 2e+0 At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) C.G. S.X.
0.02 2e+0 32 1618613_at BQ795651 hypothetical protein LOC100245552 - 6e-7 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) C.G. S.X.
0.01 2e+0 32 1616860_at BQ792203 hypothetical protein LOC100261021 - 4e-83 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) C.G. S.X.
0.03 2e+0 32 1611994_a_at CF214487 hypothetical protein LOC100260925 - 7e-8 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) C.G. S.X.
0.02 2e+0 32 1611078_a_at CF518728 hypothetical protein LOC100260925 - 1e-7 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) C.G. S.X.
0.03 6e+0 30 1622188_at CF373833 - - 4e+0 At5g66800 unknown protein C.G. S.X.
0.02 6e+0 30 1617908_at CF373287 hypothetical protein LOC100259361 - 8e-9 At5g10710 protein binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-14 79 Arabidopsis thaliana At1g68990 843232 DNA-directed RNA polymerase, mitochondrial (RPOMT) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVB - - - C.G. S.X.
0.38 9e-55 214 Glycine max GmaAffx.51952.1.S1_at CA785033 - - 4e-18 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
0.14 7e-7 54 Hordeum vulgare Contig11563_at Contig11563 - - 1e-5 At2g24120 SCA3 (SCABRA 3) C.G. S.X.
0.21 3e-43 176 Oryza sativa Os09g0246200 AB096014.1 - T7-like RNA polymerase 5e-19 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
0.41 2e-59 230 Populus trichocarpa PtpAffx.215415.1.S1_at pmrna29580 hypothetical protein - 6e-94 At5g15700 DNA-directed RNA polymerase (RPOT2) C.G. S.X.
0.20 3e-60 232 Triticum aestivum Ta.19803.1.S1_at AF091838.1 - - 1e-23 At5g15700 DNA-directed RNA polymerase (RPOT2) C.G. S.X.
0.17 4e-54 210 Zea mays Zm.629.1.S1_at AF127021.1 RNA polymerase T phage-like 1 - 9e-15 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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