Gene omics information

Query gene ID	1613837_at
Gene name	hypothetical protein LOC100248706
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please select
0.91	98.8	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please select
0.80	93.6	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.67	87.9	1617596_at	CF201215.1	hypothetical protein LOC100264999	-	1e+0	At4g32590	ferredoxin-related	S.X.	H.G.	Please select
0.67	87.9	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.36	50.7	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.4	100.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.8	99.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.7	99.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
14.2	99.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.0	99.8	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.2	99.6	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.6	99.6	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
7.5	99.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5	99.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-7	54	1622176_s_at	CF413849	hypothetical protein LOC100258362	-	3e-2	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	C.G.	S.X.	Please select
0.05	2e-6	52	1610254_at	CF517943	hypothetical protein LOC100266073	-	2e-5	At4g16530	unknown protein	C.G.	S.X.	Please select
0.04	2e-6	52	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	C.G.	S.X.	Please select
0.04	2e-6	52	1606513_s_at	CB981864	similar to Stress-related protein	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	C.G.	S.X.	Please select
0.04	7e-6	50	1616984_at	CD798634	hypothetical protein LOC100258748	-	1e-7	At2g36900	MEMB11 (MEMBRIN 11)	C.G.	S.X.	Please select
0.04	7e-6	50	1616772_at	CD799675	hypothetical protein LOC100244510	-	1e-6	At1g20670	DNA-binding bromodomain-containing protein	C.G.	S.X.	Please select
0.03	7e-6	50	1613318_at	BQ799524	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	C.G.	S.X.	Please select
0.04	7e-6	50	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	C.G.	S.X.	Please select
0.04	7e-6	50	1608950_at	CF606755	hypothetical protein LOC100251050	-	1e-6	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-4	46	Arabidopsis thaliana	At1g47670	841177	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-8	59	Glycine max	GmaAffx.14871.1.S1_at	BG510693	-	-	9e-1	At3g01760	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	HVSMEb0008L04r2_x_at	HVSMEb0008L04r2	-	-	2e+0	At3g54120	reticulon family protein (RTNLB12)	C.G.	S.X.	Please select
0.02	7e-1	36	Oryza sativa	Os02g0109100	CB622473	-	GHMP kinase family protein	7e-9	At3g54250	mevalonate diphosphate decarboxylase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	3e-8	59	Populus trichocarpa	PtpAffx.204335.1.S1_at	pmrna8532	lysine/histidine transporter	-	8e-4	At1g47670	amino acid transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-3	44	Triticum aestivum	Ta.11263.1.S1_at	BQ169728	-	-	4e+0	At4g05018	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1361.1.S1_at	40794996-49	-	-	7e-1	At3g10940	protein phosphatase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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