CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613834_at

Gene name hypothetical protein LOC100258445

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613834_at BQ797196 hypothetical protein LOC100258445 - 3e-9 At3g08030 unknown protein S.X. H.G.
0.46 66.5 1619339_s_at CF215343 ripening-related protein-like - 3e+0 At2g23780 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.46 66.5 1621448_at BQ796150 hypothetical protein LOC100251801 - 7e-3 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) S.X. H.G.
0.43 61.5 1622477_at CF414040 hypothetical protein LOC100261452 - 4e-4 At3g22550 senescence-associated protein-related S.X. H.G.
0.35 48.5 1619667_at BQ797924 similar to DRT100 - 8e-1 At5g06860 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) S.X. H.G.
0.30 39.4 1606826_at CF210409 hypothetical protein LOC100250592 - 1e-7 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 98.6 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.7 98.5 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.6 98.4 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.3 98.2 GSM287890 Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.3 98.2 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.2 98.2 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.2 98.2 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.2 98.2 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.1 98.1 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.1 98.1 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 1615589_at CD719512 - - 6e+0 At5g48515 - C.G. S.X.
0.02 2e-1 36 1614928_at CD719512 - - 6e+0 At5g48515 - C.G. S.X.
0.02 8e-1 34 1617982_at CB980316 hypothetical protein LOC100247800 - 4e-21 At3g05520 F-actin capping protein alpha subunit family protein C.G. S.X.
0.01 8e-1 34 1607974_at CF213553 hypothetical protein LOC100266932 - 1e-30 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
0.02 3e+0 32 1621372_at CF405876 hypothetical protein LOC100264642 - 8e-11 At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein C.G. S.X.
0.01 3e+0 32 1612943_at CB346200 hypothetical protein LOC100250133 - 5e-1 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 3e+0 32 1612896_at BQ794992 hypothetical protein LOC100264259 - 1e+0 At5g42470 - C.G. S.X.
0.01 3e+0 32 1610295_at BQ797947 hypothetical protein LOC100259329 - 8e-5 At2g25090 CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) C.G. S.X.
0.01 1e+1 30 1621905_at CF414354 - - 4e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-9 63 Arabidopsis thaliana At3g08030 819994 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;PB - - - C.G. S.X.
0.22 6e-33 143 Glycine max Gma.3893.2.S1_at AW310433 - - 3e-9 At3g08030 unknown protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig10884_at Contig10884 - - 3e-3 At5g17510 unknown protein C.G. S.X.
0.01 1e+0 36 Oryza sativa Os03g0853900 AK064339.1 - Conserved hypothetical protein 5e-5 At5g03830 - C.G. S.X.
0.39 2e-69 264 Populus trichocarpa Ptp.476.1.S1_at CK087241 hypothetical protein - 8e-3 At3g08030 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.85393.1.S1_at CA623082 - - 1e+0 At4g22745 MBD1 C.G. S.X.
0.02 2e-2 40 Zea mays Zm.6416.1.S1_at BQ744568 hypothetical protein LOC100277106 - 3e+0 At5g22880 HTB2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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