CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613748_at

Gene name AP1-like protein

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 80.6 1613748_at CD797578 AP1-like protein - 4e-17 At2g03710 SEP4 (SEPALLATA 4) S.X. H.G.
0.80 93.6 1615428_at AF373601.1 MADS-box protein 2 - 2e-40 At5g15800 SEP1 (SEPALLATA1) S.X. H.G.
0.77 92.3 1607719_at BQ799914 hypothetical protein LOC100253660 - 3e-10 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) S.X. H.G.
0.53 75.2 1607973_at CB969561 - - 7e-4 At4g18960 AG (AGAMOUS) S.X. H.G.
0.47 67.7 1621723_at CA817798 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) S.X. H.G.
0.46 66.5 1617026_at CD797284 - - 2e-1 At2g43940 thiol methyltransferase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.8 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
10.1 99.6 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
8.9 99.5 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
8.6 99.5 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
8.0 99.3 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.7 99.3 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.7 99.3 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.5 99.2 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.4 99.2 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.4 99.2 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 5e-32 137 1615428_at AF373601.1 MADS-box protein 2 - 2e-40 At5g15800 SEP1 (SEPALLATA1) C.G. S.X.
0.08 1e-14 79 1612606_at AF373602.1 MADS-box protein 3 - 7e-31 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.08 1e-5 50 1609046_at CB971729 hypothetical protein LOC100256085 - 1e-13 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.05 4e-5 48 1608639_at CF514898 hypothetical protein LOC100268115 - 8e-3 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.07 2e-3 42 1614965_at BQ792730 MADS-box protein 4 - 6e-36 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.02 6e-1 34 1621044_at CB004222 - - 8e-18 At5g61140 DEAD box RNA helicase, putative C.G. S.X.
0.02 6e-1 34 1618628_at CD800397 hypothetical protein LOC100244382 /// similar to Os03g0235100 - 3e-17 At1g61150 - C.G. S.X.
0.02 6e-1 34 1617263_at CB004222 hypothetical protein LOC100251846 - 8e-18 At5g61140 DEAD box RNA helicase, putative C.G. S.X.
0.02 2e+0 32 1621924_at CA817352 - - 4e+0 At5g49260 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-17 89 Arabidopsis thaliana At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. - - - C.G. S.X.
0.22 1e-30 135 Glycine max GmaAffx.70788.1.S1_at AI959798 - - 8e-35 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.11 1e-12 73 Hordeum vulgare Contig2200_s_at Contig2200 - - 2e-3 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.07 6e-5 50 Oryza sativa Os02g0682200 U78782.1 - MADS box protein 2e-4 At3g61120 AGL13 (AGAMOUS-LIKE 13) C.G. S.X.
0.15 3e-34 147 Populus trichocarpa PtpAffx.207908.1.S1_at pmrna15697 hypothetical protein - 9e-36 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.11 1e-10 67 Triticum aestivum Ta.14469.2.A1_a_at CD374109 MADS-box transcription factor TaAGL16 - 2e-5 At3g61120 AGL13 (AGAMOUS-LIKE 13) C.G. S.X.
0.04 1e-8 59 Zea mays Zm.13833.1.A1_at CF649598 Zea mays MADS6 /// Zea mays MADS7 - 4e-5 At3g61120 AGL13 (AGAMOUS-LIKE 13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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