CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613691_s_at

Gene name hypothetical protein LOC100254533

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1613691_s_at CF511746 hypothetical protein LOC100254533 - 5e-35 At2g05100 LHCB2.1 S.X. H.G.
0.67 87.9 1611247_s_at CF206748.1 similar to cytochrome f - 2e+0 At1g65490 unknown protein S.X. H.G.
0.61 83.2 1616847_s_at CA816751 hypothetical protein LOC100267942 - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) S.X. H.G.
0.50 72.7 1614231_s_at CB970079 hypothetical protein LOC100245250 - 3e-5 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) S.X. H.G.
0.44 64.1 1609160_at CF215744 hypothetical protein LOC100257877 - 2e-28 At5g47110 lil3 protein, putative S.X. H.G.
0.40 57.7 1622302_s_at CF207602 hypothetical protein LOC100245459 - 2e-19 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) S.X. H.G.
0.33 45.7 1615706_at CA816068 hypothetical protein LOC100257450 - 1e-4 At1g44920 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.2 GSM147704 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 33
2.9 93.8 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
2.8 93.4 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
2.8 93.4 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
2.8 93.4 GSM147685 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 14
2.7 93.0 GSM147697 Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation 26
2.7 93.0 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
2.7 93.0 GSM147703 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 32
2.6 92.5 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
2.6 92.5 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 8e-56 216 1610245_at CF209798 hypothetical protein LOC100252066 - 1e-20 At2g34430 LHB1B1 C.G. S.X.
0.34 4e-42 171 1618116_s_at BQ798823 hypothetical protein LOC100252004 /// hypothetical protein LOC100241745 - 2e-71 At2g34420 LHB1B2 C.G. S.X.
0.34 3e-40 165 1621351_s_at CB340283 hypothetical protein LOC100250504 - 1e-39 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.26 5e-23 107 1612273_at BQ799966 - - 3e-47 At2g34420 LHB1B2 C.G. S.X.
0.29 2e-22 105 1615822_at CF208321 hypothetical protein LOC100260599 - 3e-92 At5g54270 LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3) C.G. S.X.
0.26 8e-22 103 1621038_at CF372077 hypothetical protein LOC100245214 - 6e-22 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.23 7e-10 63 1619629_at CB340944 hypothetical protein LOC100251653 - 4e-56 At5g54270 LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3) C.G. S.X.
0.04 3e-3 42 1614593_at CF511805 hypothetical protein LOC100246457 - 2e-96 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) C.G. S.X.
0.01 4e-2 38 1622638_x_at X76892.1 hypothetical protein LOC100254891 /// similar to Stilbene synthase 2 /// stilbene synthase 2 - 2e-4 At5g13930 TT4 (TRANSPARENT TESTA 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 5e-35 149 Arabidopsis thaliana At2g05100 815058 LHCB2.1 Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1. - - - C.G. S.X.
0.50 8e-118 424 Glycine max Gma.17554.1.S1_a_at CD391527 - - 9e-80 At2g05100 LHCB2.1 C.G. S.X.
0.51 2e-73 276 Hordeum vulgare Contig189_s_at Contig189 - - 2e-34 At2g34420 LHB1B2 C.G. S.X.
0.14 4e-25 117 Oryza sativa Os03g0592500 AF061577.1 - Photosystem II type II chlorophyll a/b bindingprotein (Fragment) 3e-15 At3g27690 LHCB2.3 C.G. S.X.
0.64 0 702 Populus trichocarpa PtpAffx.6229.2.S1_at BP934327 light-harvesting complex II protein Lhcb2 - 4e-48 At2g05070 LHCB2.2 C.G. S.X.
0.26 2e-47 190 Triticum aestivum Ta.3795.1.S1_x_at U73218.1 chlorophyll a/b-binding protein WCAB precursor - 1e-26 At2g34420 LHB1B2 C.G. S.X.
0.25 9e-38 157 Zea mays Zm.13239.1.A1_at BG320233 hypothetical LOC542287 - 4e-12 At3g27690 LHCB2.3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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