Gene omics information

Query gene ID	1613648_at
Gene name	hypothetical protein LOC100263963
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.0	1613648_at	CF212152	hypothetical protein LOC100263963	-	3e-11	At1g20050	HYD1 (HYDRA1)	S.X.	H.G.	Please select
0.38	53.6	1620357_s_at	CB971346	hypothetical protein LOC100252844	-	9e-20	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select
0.36	50.7	1610812_at	CD801696	hypothetical protein LOC100257302	-	5e-13	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	S.X.	H.G.	Please select
0.21	24.0	1614280_at	CA810765	hypothetical protein LOC100242437	-	4e+0	At5g50190	-	S.X.	H.G.	Please select
0.11	11.3	1610111_at	CF372000	hypothetical protein LOC100256322	-	1e+0	At1g32770	ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)	S.X.	H.G.	Please select
0.04	5.2	1621197_at	CB971609	hypothetical protein LOC100258812	-	1e-56	At5g59910	HTB4	S.X.	H.G.	Please select
0.03	4.2	1619730_at	CF414615	hypothetical protein LOC100248900	-	4e+0	At3g60490	AP2 domain-containing transcription factor TINY, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
4.1	96.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.6	96.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.1	94.6	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	1619372_a_at	CD801329	hypothetical protein LOC100248135	-	6e-13	At1g30070	SGS domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	1616539_s_at	CF515499	hypothetical protein LOC100255081	-	5e-4	At4g01000	ubiquitin family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1613174_at	CF205266.1	-	-	4e-4	At4g01000	ubiquitin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611997_at	CA812801	hypothetical protein LOC100249691	-	4e-2	At5g55660	-	C.G.	S.X.	Please select
0.01	2e+0	32	1609336_s_at	CF207826	serine/threonine kinase GDBrPK-like /// hypothetical protein LOC100262674	-	2e-26	At4g40010	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	C.G.	S.X.	Please select
0.02	9e+0	30	1621045_at	CB981288	hypothetical protein LOC100257875	-	4e+0	At5g60945	-	C.G.	S.X.	Please select
0.02	9e+0	30	1618423_at	CB973428	hypothetical protein LOC100251379	-	5e-126	At5g42020	BIP2	C.G.	S.X.	Please select
0.02	9e+0	30	1617695_at	CF514710	-	-	1e+0	At1g28290	AGP31 (arabinogalactan-protein 31)	C.G.	S.X.	Please select
0.01	9e+0	30	1616347_at	CF212196	hypothetical protein LOC100257625	-	2e-34	At2g24360	serine/threonine/tyrosine kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-11	69	Arabidopsis thaliana	At1g20050	838593	HYD1 (HYDRA1)	C-8 sterol isomerase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	3e-34	147	Glycine max	Gma.1988.1.S1_at	BE659231	-	-	2e-16	At1g20050	HYD1 (HYDRA1)	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HVSMEn0019C12r2_at	HVSMEn0019C12r2	-	-	8e-1	At4g32280	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	C.G.	S.X.	Please select
0.07	4e-6	54	Oryza sativa	Os01g0103600	AK059848.1	-	Emopamil-binding family protein	5e-4	At1g20050	HYD1 (HYDRA1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	3e-34	147	Populus trichocarpa	PtpAffx.59676.1.S1_at	CA926925	hypothetical protein	-	2e-28	At1g20050	HYD1 (HYDRA1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.622.3.S1_at	CA692932	AML15	-	7e-1	At4g18120	AML3 (ARABIDOPSIS MEI2-LIKE 3)	C.G.	S.X.	Please select
0.02	9e-4	44	Zea mays	Zm.5703.1.A1_at	CF631931	sterol-8,7-isomerase	-	1e-1	At1g20050	HYD1 (HYDRA1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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